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内生细菌阿氏肠杆菌菌株B6_18的潜在草图序列分析

A Potential Draft Sequence Analysis of Enterobacter asburiae Strain B6_18 of an Endophytic Bacterium.

作者信息

Babalola Olubukola Oluranti, Agunbiade Victor Funso, Fadiji Ayomide Emmanuel

机构信息

Food Security and Safety Focus Area, Faculty of Natural and Agricultural Sciences, North-West University, Mmabatho, South Africa.

出版信息

Microbiol Resour Announc. 2023 May 17;12(5):e0129922. doi: 10.1128/mra.01299-22. Epub 2023 Apr 5.

DOI:10.1128/mra.01299-22
PMID:37017546
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10190259/
Abstract

The work presented here describes the genomic analysis of the maize plant-isolated endophytic strain Enterobacter asburiae B6_18 from Northwest Province, South Africa, for potential maize plant growth-promoting traits.

摘要

本文介绍了对从南非西北省玉米植株中分离出的内生菌株阿氏肠杆菌B6_18进行基因组分析，以探究其促进玉米植株生长的潜在特性。

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本文引用的文献

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Whole Genome Sequencing of Sunflower Root-Associated .向日葵根际相关的全基因组测序
Evol Bioinform Online. 2021 Aug 16;17:11769343211038948. doi: 10.1177/11769343211038948. eCollection 2021.
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Metagenomic profiling of the community structure, diversity, and nutrient pathways of bacterial endophytes in maize plant.玉米植物内生细菌群落结构、多样性及养分代谢途径的宏基因组分析。
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GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.GTDB-Tk：一个使用基因组分类数据库对基因组进行分类的工具包。
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KBase: The United States Department of Energy Systems Biology Knowledgebase.KBase：美国能源部系统生物学知识库。
Nat Biotechnol. 2018 Jul 6;36(7):566-569. doi: 10.1038/nbt.4163.
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RefSeq: an update on prokaryotic genome annotation and curation.RefSeq：原核生物基因组注释和管理的最新进展。
Nucleic Acids Res. 2018 Jan 4;46(D1):D851-D860. doi: 10.1093/nar/gkx1068.
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Isolation and characterization of plant growth-promoting rhizobacteria from wheat rhizosphere and their effect on plant growth promotion.从小麦根际分离和鉴定促进植物生长的根际细菌及其对植物生长促进的作用。
Front Microbiol. 2015 Mar 17;6:198. doi: 10.3389/fmicb.2015.00198. eCollection 2015.
7
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
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Assembling single-cell genomes and mini-metagenomes from chimeric MDA products.从嵌合MDA产物中组装单细胞基因组和微型宏基因组。
J Comput Biol. 2013 Oct;20(10):714-37. doi: 10.1089/cmb.2013.0084.
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Endophytic bacteria improve seedling growth of sunflower under water stress, produce salicylic acid, and inhibit growth of pathogenic fungi.内生细菌可在水分胁迫下促进向日葵幼苗生长，产生水杨酸，并抑制病原真菌生长。
Curr Microbiol. 2010 Dec;61(6):485-93. doi: 10.1007/s00284-010-9642-1. Epub 2010 Apr 11.
10
Screening of free-living rhizospheric bacteria for their multiple plant growth promoting activities.筛选自由生活的根际细菌以获取其多种促进植物生长的活性。
Microbiol Res. 2008;163(2):173-81. doi: 10.1016/j.micres.2006.04.001. Epub 2006 Jun 2.