State Key Laboratory of Microbiol Technology, Institute of Microbial Technology, Shandong University, Qingdao, 266237, PR China.
Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing 100700, PR China.
Int J Syst Evol Microbiol. 2023 Apr;73(4). doi: 10.1099/ijsem.0.005816.
A novel strain, designated as LRZ36, was isolated from deep-sea sediment (from a depth of 5400 m) from the Mariana Trench. Cells of this strain are rod-shaped, Gram-stain-negative, strictly aerobic and non-motile. Phylogenetic analysis of LRZ36 based on 16S rRNA gene sequences revealed a lineage in the family but distinct from the most closely related species CGMCC 1.17725, '' KCTC 12094 and DSM 14790 with sequence identities of 99.4 %, 98.0 and 97.9 %, respectively. The genome of LRZ36 was 3.8 Mbp in size with a DNA G+C content of 64.8 %, containing 3623 predicted coding genes. LRZ36 showed average nucleotide identity values of 89.8 %, 78.7 and 78.5 % and digital DNA-DNA hybridization values of 38.9 %, 21.7 and 21.6 % with CGMCC 1.17725, '' KCTC 12094 and DSM 14790, respectively. The major respiratory quinone was ubiquinone-10 (Q-10), and the predominant fatty acids were Cω7 (74.4 %) and C (12.1 %). The polar lipids in LRZ36 are diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylmethylethanolamine, phosphatidylcholine, phosphatidylinositol mannoside, an unidentified aminophospholipid, three unidentified lipids, three unidentified phospholipids and two unidentified aminolipids. On the basis of genotypic and phenotypic evidence, LRZ36 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is LRZ36 (= KCTC 92065 = GDMCC 1.2985=MCCC 1K07227).
一株新的菌株,被命名为 LRZ36,从马里亚纳海沟(水深 5400 米)的深海沉积物中分离出来。该菌株的细胞呈杆状,革兰氏染色阴性,严格需氧,不运动。基于 16S rRNA 基因序列的 LRZ36 系统发育分析显示,它属于家族,但与最密切相关的物种 CGMCC 1.17725、“KCTC 12094 和 DSM 14790 不同,序列同一性分别为 99.4%、98.0%和 97.9%。LRZ36 的基因组大小为 3.8 Mbp,GC 含量为 64.8%,包含 3623 个预测编码基因。LRZ36 与 CGMCC 1.17725、“KCTC 12094 和 DSM 14790 的平均核苷酸同一性值分别为 89.8%、78.7%和 78.5%,数字 DNA-DNA 杂交值分别为 38.9%、21.7%和 21.6%。主要呼吸醌为泛醌-10(Q-10),主要脂肪酸为 Cω7(74.4%)和 C(12.1%)。LRZ36 中的极性脂类有二磷脂酰甘油、磷脂酰乙醇胺、磷脂酰甲乙醇胺、磷脂酰胆碱、磷脂酰肌醇甘露糖苷、一种未鉴定的氨基磷脂、三种未鉴定的脂类、三种未鉴定的磷脂和两种未鉴定的氨基脂类。基于基因型和表型证据,LRZ36 代表了属的一个新种,建议命名为 sp. nov.。模式菌株为 LRZ36(=KCTC 92065=GDMCC 1.2985=MCCC 1K07227)。