• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

5-甲基腺苷调节剂在慢性过敏性肺炎和特发性肺纤维化的发展中起着关键作用。

5-methyladenosine regulators play a crucial role in development of chronic hypersensitivity pneumonitis and idiopathic pulmonary fibrosis.

机构信息

Department of Respiratory and Critical Care Medicine, Changhai Hospital, Shanghai, China.

出版信息

Sci Rep. 2023 Apr 12;13(1):5941. doi: 10.1038/s41598-023-32452-4.

DOI:10.1038/s41598-023-32452-4
PMID:37045913
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10097674/
Abstract

5-methyladenosine (m5C) modification regulates gene expression and biological functions in oncologic areas. However, the effect of m5C modification in chronic hypersensitivity pneumonitis (CHP) and idiopathic pulmonary fibrosis (IPF) remains unknown. Expression data for 12 significant m5C regulators were obtained from the interstitial lung disease dataset. Five candidate m5C regulators, namely tet methylcytosine dioxygenase 2, NOP2/Sun RNA methyltransferase 5, Y-box binding protein 1, tRNA aspartic acid methyltransferase 1, and NOP2/Sun RNA methyltransferase 3 were screened using random forest and nomogram models to predict risks of pulmonary fibrosis. Next, we applied the consensus clustering method to stratify the samples with different m5C patterns into two groups (cluster A and B). Finally, we calculated immune cell infiltration scores via single-sample gene set enrichment analysis, then compared immune cell infiltration, related functions as well as the expression of programmed cell death 1 (PD-1, PDCD1) and programmed death protein ligand-1 (PD-L1, CD274) between the two clusters. Principal component analysis of m5C-related scores across the 288 samples revealed that cluster A had higher immune-related expression than B. Notably, T helper cell (Th) 2 type cytokines and Th1 signatures were more abundant in clusters A and B, respectively. Our results suggest that m5C is associated with and plays a crucial role in development of pulmonary fibrosis. These m5C patterns could be potential biomarkers for identification of CHP and IPF, and guide future development of immunotherapy or other new drugs strategies for pulmonary fibrosis.

摘要

5- 甲基腺苷(m5C)修饰调节肿瘤学领域的基因表达和生物学功能。然而,m5C 修饰在慢性过敏性肺炎(CHP)和特发性肺纤维化(IPF)中的作用尚不清楚。从间质性肺病数据集获得了 12 个显著的 m5C 调节剂的表达数据。使用随机森林和列线图模型筛选了 5 个候选 m5C 调节剂,即四甲基胞嘧啶双加氧酶 2、NOP2/Sun RNA 甲基转移酶 5、Y 框结合蛋白 1、天冬氨酸 tRNA 甲基转移酶 1 和 NOP2/Sun RNA 甲基转移酶 3,以预测肺纤维化的风险。接下来,我们应用共识聚类方法将具有不同 m5C 模式的样本分为两组(A 组和 B 组)。最后,我们通过单样本基因集富集分析计算免疫细胞浸润评分,然后比较两组之间的免疫细胞浸润、相关功能以及程序性细胞死亡 1(PD-1、PDCD1)和程序性死亡蛋白配体 1(PD-L1、CD274)的表达。288 个样本中 m5C 相关评分的主成分分析表明,A 组的免疫相关表达高于 B 组。值得注意的是,A 组和 B 组分别富含辅助性 T 细胞(Th)2 型细胞因子和 Th1 特征。我们的研究结果表明,m5C 与肺纤维化的发生发展有关,并发挥关键作用。这些 m5C 模式可能是鉴定 CHP 和 IPF 的潜在生物标志物,并为肺纤维化的免疫治疗或其他新药策略的未来发展提供指导。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/c52e05189f1c/41598_2023_32452_Fig12_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/af9a60c65e15/41598_2023_32452_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/0274bcdb4162/41598_2023_32452_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/4b094c0b0416/41598_2023_32452_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/27af3ccf215a/41598_2023_32452_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/e8b429dbde83/41598_2023_32452_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/766dc563f091/41598_2023_32452_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/90069e60f4ef/41598_2023_32452_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/917eba92d66a/41598_2023_32452_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/ce941bba1dac/41598_2023_32452_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/3c444e3757c0/41598_2023_32452_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/2b5e97d169ec/41598_2023_32452_Fig11_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/c52e05189f1c/41598_2023_32452_Fig12_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/af9a60c65e15/41598_2023_32452_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/0274bcdb4162/41598_2023_32452_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/4b094c0b0416/41598_2023_32452_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/27af3ccf215a/41598_2023_32452_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/e8b429dbde83/41598_2023_32452_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/766dc563f091/41598_2023_32452_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/90069e60f4ef/41598_2023_32452_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/917eba92d66a/41598_2023_32452_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/ce941bba1dac/41598_2023_32452_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/3c444e3757c0/41598_2023_32452_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/2b5e97d169ec/41598_2023_32452_Fig11_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d787/10097674/c52e05189f1c/41598_2023_32452_Fig12_HTML.jpg

相似文献

1
5-methyladenosine regulators play a crucial role in development of chronic hypersensitivity pneumonitis and idiopathic pulmonary fibrosis.5-甲基腺苷调节剂在慢性过敏性肺炎和特发性肺纤维化的发展中起着关键作用。
Sci Rep. 2023 Apr 12;13(1):5941. doi: 10.1038/s41598-023-32452-4.
2
Relevance of RNA N6-Methyladenosine Regulators for Pulmonary Fibrosis: Implications for Chronic Hypersensitivity Pneumonitis and Idiopathic Pulmonary Fibrosis.RNA N6-甲基腺苷调节剂与肺纤维化的相关性:对慢性过敏性肺炎和特发性肺纤维化的影响
Front Genet. 2022 Jul 14;13:939175. doi: 10.3389/fgene.2022.939175. eCollection 2022.
3
Chronic Hypersensitivity Pneumonitis, an Interstitial Lung Disease with Distinct Molecular Signatures.慢性过敏性肺炎,一种具有独特分子特征的间质性肺疾病。
Am J Respir Crit Care Med. 2020 Nov 15;202(10):1430-1444. doi: 10.1164/rccm.202001-0134OC.
4
Exploring the importance of m5c in the diagnosis and subtype classification of COPD using the GEO database.利用 GEO 数据库探索 m5c 在 COPD 诊断和亚型分类中的重要性。
Gene. 2024 Feb 15;895:147987. doi: 10.1016/j.gene.2023.147987. Epub 2023 Nov 14.
5
m5C RNA Methylation Regulators Predict Prognosis and Regulate the Immune Microenvironment in Lung Squamous Cell Carcinoma.m5C RNA甲基化调节剂预测肺鳞状细胞癌的预后并调节其免疫微环境
Front Oncol. 2021 Jun 9;11:657466. doi: 10.3389/fonc.2021.657466. eCollection 2021.
6
Identification of Chronic Hypersensitivity Pneumonitis Biomarkers with Machine Learning and Differential Co-expression Analysis.利用机器学习和差异共表达分析鉴定慢性过敏性肺炎生物标志物
Curr Gene Ther. 2021;21(4):299-303. doi: 10.2174/1566523220666201208093325.
7
Chronic hypersensitivity pneumonitis or idiopathic pulmonary fibrosis? Diagnostic role of high resolution Computed Tomography (HRCT).慢性过敏性肺炎还是特发性肺纤维化?高分辨率计算机断层扫描(HRCT)的诊断作用。
Radiol Med. 2003 Sep;106(3):135-46.
8
High-resolution CT features distinguishing usual interstitial pneumonia pattern in chronic hypersensitivity pneumonitis from those with idiopathic pulmonary fibrosis.高分辨率CT特征鉴别慢性过敏性肺炎中的寻常型间质性肺炎模式与特发性肺纤维化中的模式。
Jpn J Radiol. 2020 Jun;38(6):524-532. doi: 10.1007/s11604-020-00932-6. Epub 2020 Feb 26.
9
Histopathologic analysis of sixteen autopsy cases of chronic hypersensitivity pneumonitis and comparison with idiopathic pulmonary fibrosis/usual interstitial pneumonia.16例慢性过敏性肺炎尸检病例的组织病理学分析及其与特发性肺纤维化/普通间质性肺炎的比较
Am J Clin Pathol. 2009 Mar;131(3):405-15. doi: 10.1309/AJCPNWX4SLZRP9SW.
10
Pathology of Chronic Hypersensitivity Pneumonitis What Is It? What Are the Diagnostic Criteria? Why Do We Care?慢性过敏性肺炎的病理学 它是什么?诊断标准是什么?我们为何关注?
Arch Pathol Lab Med. 2018 Jan;142(1):109-119. doi: 10.5858/arpa.2017-0173-RA. Epub 2017 May 24.

引用本文的文献

1
Ten-Eleven Translocation Family Proteins: Structure, Biological Functions, Diseases, and Targeted Therapy.10-11易位家族蛋白:结构、生物学功能、疾病及靶向治疗
MedComm (2020). 2025 Jul 1;6(7):e70245. doi: 10.1002/mco2.70245. eCollection 2025 Jul.
2
m5C RNA methylation in cancer: from biological mechanism to clinical perspectives.癌症中的m5C RNA甲基化:从生物学机制到临床视角
Eur J Med Res. 2025 Jun 21;30(1):503. doi: 10.1186/s40001-025-02812-z.
3
Diagnostic and predictive values of m5C‑associated genes in idiopathic pulmonary fibrosis.

本文引用的文献

1
Multi-omics analysis of expression and prognostic value of NSUN members in prostate cancer.前列腺癌中NSUN成员的表达及预后价值的多组学分析
Front Oncol. 2022 Aug 1;12:965571. doi: 10.3389/fonc.2022.965571. eCollection 2022.
2
Relevance of RNA N6-Methyladenosine Regulators for Pulmonary Fibrosis: Implications for Chronic Hypersensitivity Pneumonitis and Idiopathic Pulmonary Fibrosis.RNA N6-甲基腺苷调节剂与肺纤维化的相关性:对慢性过敏性肺炎和特发性肺纤维化的影响
Front Genet. 2022 Jul 14;13:939175. doi: 10.3389/fgene.2022.939175. eCollection 2022.
3
Characterization of Immune-Related Genes and Immune Infiltration Features in Epilepsy by Multi-Transcriptome Data.
m5C相关基因在特发性肺纤维化中的诊断和预测价值
Mol Med Rep. 2025 Feb;31(2). doi: 10.3892/mmr.2024.13418. Epub 2024 Dec 20.
基于多转录组数据的癫痫免疫相关基因及免疫浸润特征分析
J Inflamm Res. 2022 May 5;15:2855-2876. doi: 10.2147/JIR.S360743. eCollection 2022.
4
Causative Classification of Ischemic Stroke by the Machine Learning Algorithm Random Forests.基于随机森林机器学习算法的缺血性中风病因分类
Front Aging Neurosci. 2022 Apr 15;14:788637. doi: 10.3389/fnagi.2022.788637. eCollection 2022.
5
m5CRegpred: Epitranscriptome Target Prediction of 5-Methylcytosine (m5C) Regulators Based on Sequencing Features.m5CRegpred:基于测序特征的 5-甲基胞嘧啶(m5C)调控因子的转录组靶标预测。
Genes (Basel). 2022 Apr 12;13(4):677. doi: 10.3390/genes13040677.
6
A Simple Algorithm Using Ventilator Parameters to Predict Successfully Rapid Weaning Program in Cardiac Intensive Care Unit Patients.一种利用呼吸机参数成功预测心脏重症监护病房患者快速撤机方案的简单算法。
J Pers Med. 2022 Mar 21;12(3):501. doi: 10.3390/jpm12030501.
7
Role of Main RNA Methylation in Hepatocellular Carcinoma: N6-Methyladenosine, 5-Methylcytosine, and N1-Methyladenosine.主要RNA甲基化在肝细胞癌中的作用:N6-甲基腺苷、5-甲基胞嘧啶和N1-甲基腺苷
Front Cell Dev Biol. 2021 Nov 30;9:767668. doi: 10.3389/fcell.2021.767668. eCollection 2021.
8
CD247, a Potential T Cell-Derived Disease Severity and Prognostic Biomarker in Patients With Idiopathic Pulmonary Fibrosis.CD247,特发性肺纤维化患者中潜在的 T 细胞来源的疾病严重程度和预后生物标志物。
Front Immunol. 2021 Nov 22;12:762594. doi: 10.3389/fimmu.2021.762594. eCollection 2021.
9
Bioinformatic analysis of differentially expressed genes and pathways in idiopathic pulmonary fibrosis.特发性肺纤维化中差异表达基因和通路的生物信息学分析
Ann Transl Med. 2021 Sep;9(18):1459. doi: 10.21037/atm-21-4224.
10
Chronic hypersensitivity pneumonitis: real world diagnostic criteria.慢性过敏性肺炎:真实世界的诊断标准。
Curr Opin Pulm Med. 2021 Sep 1;27(5):414-421. doi: 10.1097/MCP.0000000000000799.