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利用全基因组测序回顾精英运动队中的 COVID-19 疫情。

Looking back on the COVID-19 pandemic in an elite sports team using whole genome sequencing.

机构信息

Department of Viroscience, Erasmus University Medical Center, the Netherlands.

Department of Surgery, Erasmus University Medical Center, the Netherlands.

出版信息

J Sci Med Sport. 2023 Apr-May;26(4-5):218-221. doi: 10.1016/j.jsams.2023.03.010. Epub 2023 Mar 23.

Abstract

OBJECTIVES

The aim of this study was to investigate the effectiveness of infection control measures to prevent transmission of SARS-CoV-2 within a professional sports team using whole genome sequencing.

DESIGN

Prospective cohort study.

METHODS

74 players and staff members of a Dutch professional male football team were followed from August 2020 until May 2021. A set of health and safety measures were introduced and all participants underwent regular SARS-CoV-2 RNA testing. All positive samples were subsequently sequenced (Nanopore sequencing) to assess whether infections were acquired within the training center or in the community.

RESULTS

Throughout the study period, 13 participants tested positive for SARS-CoV-2. The phylogenetic analysis revealed 2 clusters (of 2 and 3 cases respectively), indicating that 3/13 cases (23%) acquired infection from another player or staff member. The first cluster was diagnosed upon enrolment, thus transmission had occurred prior to the implementation of health and safety protocols. Finally, 4 cases were diagnosed prior to symptom onset, emphasizing that frequent testing leads to early detection and isolation.

CONCLUSIONS

These data show that a combination of regular testing and basic control measures can prevent outbreaks of COVID-19 in a professional sports team. Whole genome sequencing is an important tool to distinguish between infections introduced from the community and infections transmitted between athletes.

摘要

目的

本研究旨在通过全基因组测序调查感染控制措施在预防职业运动队中 SARS-CoV-2 传播方面的效果。

设计

前瞻性队列研究。

方法

2020 年 8 月至 2021 年 5 月,对一支荷兰职业男子足球队的 74 名球员和工作人员进行了随访。引入了一套健康和安全措施,所有参与者都接受了定期的 SARS-CoV-2 RNA 检测。所有阳性样本随后进行测序(纳米孔测序),以评估感染是在训练中心内还是在社区内获得的。

结果

在整个研究期间,有 13 名参与者的 SARS-CoV-2 检测呈阳性。系统发育分析显示有 2 个簇(分别为 2 例和 3 例),表明有 3/13 例(23%)从另一名球员或工作人员那里获得感染。第一个簇在入组时被诊断出,因此传播发生在实施健康和安全协议之前。最后,有 4 例在症状出现前被诊断出,这强调了频繁检测可以实现早期发现和隔离。

结论

这些数据表明,定期检测和基本控制措施的结合可以预防职业运动队中 COVID-19 的爆发。全基因组测序是区分社区引入感染和运动员之间传播感染的重要工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a32/10035795/a4f5776971de/gr1_lrg.jpg

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