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大豆基因家族的全基因组鉴定与特征分析

Genome-Wide Identification and Characterization of Gene Family in Soybean.

作者信息

Zhang Xu, Chen Bowei, Wang Lishan, Ali Shahid, Guo Yile, Liu Jiaxi, Wang Jiang, Xie Linan, Zhang Qingzhu

机构信息

College of Life Science, Northeast Forestry University, Harbin 150040, China.

Key Laboratory of Saline-Alkali Vegetation Ecology Restoration, Ministry of Education, College of Life Science, Northeast Forestry University, Harbin 150040, China.

出版信息

Plants (Basel). 2021 Dec 20;10(12):2816. doi: 10.3390/plants10122816.

Abstract

Soybean is one of the most important legumes, providing high-quality protein for humans. The gene has previously been demonstrated to be a critical gene that regulates lignin production in plant cell walls and plays an important function in plant growth and development. However, the gene family has not been studied in soybeans. In this study, 55 family genes in soybean were identified by phylogenetic analysis and divided into two groups, I and II. The analysis of conserved domains showed that all genes contained Methyltransferase-2 domains. Further prediction of cis-acting elements showed that genes were associated with growth, light, stress, and hormonal responses. Eventually, based on the genomic data of soybean under different stresses, the results showed that the expression of genes was different under different stresses, such as salt and drought stress. This study has identified and characterized the gene family in soybean, which provides an important theoretical basis for further research on the biological functions of genes and promotes revealing the role of genes under stress resistance.

摘要

大豆是最重要的豆类之一,为人类提供高质量蛋白质。该基因先前已被证明是调节植物细胞壁木质素生成的关键基因,在植物生长发育中发挥重要作用。然而,该基因家族尚未在大豆中得到研究。在本研究中,通过系统发育分析鉴定了大豆中的55个该家族基因,并将其分为I组和II组。保守结构域分析表明,所有该基因均含有甲基转移酶-2结构域。对顺式作用元件的进一步预测表明,该基因与生长、光照、胁迫和激素反应相关。最终,基于不同胁迫下大豆的基因组数据,结果表明该基因在盐胁迫和干旱胁迫等不同胁迫下的表达存在差异。本研究鉴定并表征了大豆中的该基因家族,为进一步研究该基因的生物学功能提供了重要的理论基础,并有助于揭示该基因在抗逆性中的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2c4d/8703356/7f934fb48bb3/plants-10-02816-g001.jpg

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