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通过网络方法探索银屑病及其相关合并症的分子基础:基因与通路的相互作用

Exploring the molecular underpinning of psoriasis and its associated comorbidities through network approach: cross talks of genes and pathways.

作者信息

Choudhary Saumya, Khan Noor Saba, Verma Rashi, Saxena Pallavi, Singh Harpreet, Jain Arun Kumar, Thomas George, Pradhan Dibyabhaba, Kumar Neeraj

机构信息

ICMR-National Institute of Pathology, New Delhi, 110029 India.

Department of Molecular and Cellular Engineering, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj (Allahabad), 211007 India.

出版信息

3 Biotech. 2023 May;13(5):130. doi: 10.1007/s13205-023-03533-y. Epub 2023 Apr 13.

Abstract

UNLABELLED

Patients with psoriasis often complain of several linked disorders including autoimmune and cardiometabolic diseases. Understanding of molecular link between psoriasis and associated comorbidities would be of great interest at the point of patient care management. Integrative unbiased network approach, indicates significant unidirectional gene overlap between psoriasis and its associated comorbid condition including obesity (31 upregulated and 26 downregulated), ischemic stroke (14 upregulated and 2 downregulated), dyslipidaemia (5 upregulated, 5 downregulated), atherosclerosis (8 upregulated and 1 downregulated) and type II diabetes (5 upregulated, 5 downregulated). The analysis revealed substantial gene sharing among the different psoriasis-associated comorbidities. Molecular comorbidity index determining the strength of the interrelation between psoriasis and its comorbidities indicates prevalence of dyslipidaemia followed by type II diabetes among psoriasis patients. The Jaccard coefficient indices revealed psoriasis shared maximum number of biological pathways with dyslipidaemia followed by type 2 diabetes, ischemic stroke, obesity and atherosclerosis. Moreover, pathway annotation highlighted nearly 45 shared pathways amongst psoriasis and its comorbidities and a substantial number of shared pathways was found among multi-morbidities. Overall, the present study established conceivable link between psoriasis and comorbid diseases. The shared genes and overlapped pathways may be explored as a common productive target for psoriasis and its comorbid conditions.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s13205-023-03533-y.

摘要

未标注

银屑病患者常伴有多种相关疾病,包括自身免疫性疾病和心血管代谢疾病。在患者护理管理方面,了解银屑病与其相关合并症之间的分子联系将非常有意义。综合无偏网络方法表明,银屑病与其相关合并症之间存在显著的单向基因重叠,这些合并症包括肥胖(31个上调基因和26个下调基因)、缺血性中风(14个上调基因和2个下调基因)、血脂异常(5个上调基因、5个下调基因)、动脉粥样硬化(8个上调基因和1个下调基因)以及II型糖尿病(5个上调基因、5个下调基因)。分析显示,不同的银屑病相关合并症之间存在大量基因共享。确定银屑病与其合并症之间相互关系强度的分子合并症指数表明,银屑病患者中血脂异常的患病率最高,其次是II型糖尿病。杰卡德系数指数显示,银屑病与血脂异常共享的生物途径数量最多,其次是2型糖尿病、缺血性中风、肥胖和动脉粥样硬化。此外,通路注释突出了银屑病与其合并症之间近45条共享通路,并且在多种合并症之间发现了大量共享通路。总体而言,本研究建立了银屑病与合并症之间可能的联系。共享基因和重叠通路可作为银屑病及其合并症的共同有效治疗靶点进行探索。

补充信息

在线版本包含可在10.1007/s13205-023-03533-y获取的补充材料。

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本文引用的文献

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