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从大鹏湾表层海水中分离出的海洋细菌施氏假单胞菌菌株SOCE 002的全基因组序列

Complete Genome Sequence of Stutzerimonas stutzeri Strain SOCE 002, a Marine Bacterium Isolated from the Surface Seawater of Dapeng Bay.

作者信息

Guo Jing, Xu Shuaishuai, Liu Yanting, Zhang Chuanlun, Hou Shengwei

机构信息

Department of Ocean Science and Engineering, Southern University of Science and Technology, Shenzhen, China.

Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, China.

出版信息

Microbiol Resour Announc. 2023 May 17;12(5):e0015023. doi: 10.1128/mra.00150-23. Epub 2023 Apr 17.

DOI:10.1128/mra.00150-23
PMID:37067410
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10190272/
Abstract

We report the complete genome sequence of Stutzerimonas stutzeri strain SOCE 002, obtained from Illumina and Oxford Nanopore sequencing. The genome is 4.68 Mb long, with a GC content of 63.5%, and contains 4,334 protein-coding genes, 60 tRNAs, and 12 rRNAs. We expect that this complete genome sequence will provide a reference for both genomic and metabolic analyses of S. stutzeri.

摘要

我们报告了从Illumina和Oxford Nanopore测序获得的施氏假单胞菌菌株SOCE 002的全基因组序列。该基因组长度为468万个碱基对,GC含量为63.5%,包含4334个蛋白质编码基因、60个tRNA和12个rRNA。我们期望这个全基因组序列将为施氏假单胞菌的基因组和代谢分析提供参考。

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本文引用的文献

1
Genome-Based Taxonomy of the Genus and Proposal of sp. nov. and sp. nov. and Emended Descriptions of and .基于基因组的属分类学及新物种sp. nov.和sp. nov.的提议以及对 和 的修订描述。
Microorganisms. 2022 Jul 6;10(7):1363. doi: 10.3390/microorganisms10071363.
2
viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data. viralFlye:从长读宏基因组数据中组装病毒并鉴定其宿主。
Genome Biol. 2022 Feb 21;23(1):57. doi: 10.1186/s13059-021-02566-x.
3
Comparative Genomics of Complex: Taxonomic Assignments and Genetic Diversity.复杂生物的比较基因组学:分类归属与遗传多样性
Front Microbiol. 2022 Jan 13;12:755874. doi: 10.3389/fmicb.2021.755874. eCollection 2021.
4
NextPolish: a fast and efficient genome polishing tool for long-read assembly.NextPolish:一种用于长读长组装的快速高效基因组精修工具。
Bioinformatics. 2020 Apr 1;36(7):2253-2255. doi: 10.1093/bioinformatics/btz891.
5
Performance of neural network basecalling tools for Oxford Nanopore sequencing.基于神经网络的牛津纳米孔测序碱基调用工具的性能。
Genome Biol. 2019 Jun 24;20(1):129. doi: 10.1186/s13059-019-1727-y.
6
NanoPack: visualizing and processing long-read sequencing data.NanoPack:可视化和处理长读测序数据。
Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149.
7
Draft Genome Sequence of Strain 19, an Isolate Capable of Efficient Degradation of Aromatic Hydrocarbons.19号菌株的基因组序列草图,该菌株是一种能够高效降解芳烃的分离株。
Genome Announc. 2017 Dec 7;5(49):e01373-17. doi: 10.1128/genomeA.01373-17.
8
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器:从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
9
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
10
Bandage: interactive visualization of de novo genome assemblies.绷带:从头基因组组装的交互式可视化
Bioinformatics. 2015 Oct 15;31(20):3350-2. doi: 10.1093/bioinformatics/btv383. Epub 2015 Jun 22.