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艾氏剂对前列腺癌细胞代谢影响的多层次系统生物学分析

A Multi-Level Systems Biology Analysis of Aldrin's Metabolic Effects on Prostate Cancer Cells.

作者信息

Bedia Carmen, Dalmau Nuria, Nielsen Lars K, Tauler Romà, Marín de Mas Igor

机构信息

Department of Environmental Chemistry, Institute of Environmental Assessment and Water Research (IDAEA-CSIC), 08034 Barcelona, Spain.

The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800 Lyngby, Denmark.

出版信息

Proteomes. 2023 Mar 23;11(2):11. doi: 10.3390/proteomes11020011.

Abstract

Although numerous studies support a dose-effect relationship between Endocrine disruptors (EDs) and the progression and malignancy of tumors, the impact of a chronic exposure to non-lethal concentrations of EDs in cancer remains unknown. More specifically, a number of studies have reported the impact of Aldrin on a variety of cancer types, including prostate cancer. In previous studies, we demonstrated the induction of the malignant phenotype in DU145 prostate cancer (PCa) cells after a chronic exposure to Aldrin (an ED). Proteins are pivotal in the regulation and control of a variety of cellular processes. However, the mechanisms responsible for the impact of ED on PCa and the role of proteins in this process are not yet well understood. Here, two complementary computational approaches have been employed to investigate the molecular processes underlying the acquisition of malignancy in prostate cancer. First, the metabolic reprogramming associated with the chronic exposure to Aldrin in DU145 cells was studied by integrating transcriptomics and metabolomics via constraint-based metabolic modeling. Second, gene set enrichment analysis was applied to determine (i) altered regulatory pathways and (ii) the correlation between changes in the transcriptomic profile of Aldrin-exposed cells and tumor progression in various types of cancer. Experimental validation confirmed predictions revealing a disruption in metabolic and regulatory pathways. This alteration results in the modification of protein levels crucial in regulating triacylglyceride/cholesterol, linked to the malignant phenotype observed in Aldrin-exposed cells.

摘要

尽管众多研究支持内分泌干扰物(EDs)与肿瘤进展及恶性程度之间存在剂量效应关系,但长期暴露于非致死浓度的EDs对癌症的影响仍不明确。更具体地说,多项研究报告了艾氏剂对包括前列腺癌在内的多种癌症类型的影响。在之前的研究中,我们证明了DU145前列腺癌细胞在长期暴露于艾氏剂(一种ED)后会诱导出恶性表型。蛋白质在各种细胞过程的调节和控制中起着关键作用。然而,ED对前列腺癌的影响机制以及蛋白质在此过程中的作用尚未得到充分理解。在此,我们采用了两种互补的计算方法来研究前列腺癌恶性化过程背后的分子机制。首先,通过基于约束的代谢建模整合转录组学和代谢组学,研究了DU145细胞长期暴露于艾氏剂时相关的代谢重编程。其次,应用基因集富集分析来确定(i)改变的调控途径以及(ii)暴露于艾氏剂的细胞转录组谱变化与各种癌症类型肿瘤进展之间的相关性。实验验证证实了预测结果,揭示了代谢和调控途径的破坏。这种改变导致了在调节三酰甘油/胆固醇中起关键作用的蛋白质水平的改变,这与在暴露于艾氏剂的细胞中观察到的恶性表型有关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a2e3/10123692/3cc0cdbc4bb2/proteomes-11-00011-g001.jpg

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