Department of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, NC, USA.
Nucleic Acids Res. 2023 Jul 7;51(12):6238-6245. doi: 10.1093/nar/gkad334.
Nucleotide excision repair removes UV-induced DNA damage through two distinct sub-pathways, global repair and transcription-coupled repair (TCR). Numerous studies have shown that in human and other mammalian cell lines that the XPC protein is required for repair of DNA damage from nontranscribed DNA via global repair and the CSB protein is required for repair of lesions from transcribed DNA via TCR. Therefore, it is generally assumed that abrogating both sub-pathways with an XPC-/-/CSB-/- double mutant would eliminate all nucleotide excision repair. Here we describe the construction of three different XPC-/-/CSB-/- human cell lines that, contrary to expectations, perform TCR. The XPC and CSB genes were mutated in cell lines derived from Xeroderma Pigmentosum patients as well as from normal human fibroblasts and repair was analyzed at the whole genome level using the very sensitive XR-seq method. As predicted, XPC-/- cells exhibited only TCR and CSB-/- cells exhibited only global repair. However, the XPC-/-/CSB-/- double mutant cell lines, although having greatly reduced repair, exhibited TCR. Mutating the CSA gene to generate a triple mutant XPC-/-/CSB-/-/CSA-/- cell line eliminated all residual TCR activity. Together, these findings provide new insights into the mechanistic features of mammalian nucleotide excision repair.
核苷酸切除修复通过两条不同的亚途径,即全局修复和转录偶联修复(TCR),去除 UV 诱导的 DNA 损伤。许多研究表明,在人类和其他哺乳动物细胞系中,XPC 蛋白是通过全局修复修复非转录 DNA 中 DNA 损伤所必需的,CSB 蛋白是通过 TCR 修复转录 DNA 中损伤所必需的。因此,人们普遍认为,用 XPC-/-/CSB-/-双突变体阻断这两个亚途径将消除所有核苷酸切除修复。在这里,我们描述了三种不同的 XPC-/-/CSB-/-人类细胞系的构建,这些细胞系与预期相反,能够进行 TCR。XPC 和 CSB 基因在来自着色性干皮病患者的细胞系以及来自正常人类成纤维细胞的细胞系中发生突变,并使用非常敏感的 XR-seq 方法在全基因组水平上分析修复情况。如预测的那样,XPC-/-细胞仅表现出 TCR,CSB-/-细胞仅表现出全局修复。然而,XPC-/-/CSB-/-双突变体细胞系尽管修复能力大大降低,但仍表现出 TCR。突变 CSA 基因生成三重突变体 XPC-/-/CSB-/-/CSA-/-细胞系消除了所有残留的 TCR 活性。这些发现共同为哺乳动物核苷酸切除修复的机制特征提供了新的见解。
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