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人源细胞系中 XPC 和 CSB 蛋白缺失时的核苷酸切除修复。

Nucleotide excision repair in Human cell lines lacking both XPC and CSB proteins.

机构信息

Department of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, NC, USA.

出版信息

Nucleic Acids Res. 2023 Jul 7;51(12):6238-6245. doi: 10.1093/nar/gkad334.


DOI:10.1093/nar/gkad334
PMID:37144462
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10325923/
Abstract

Nucleotide excision repair removes UV-induced DNA damage through two distinct sub-pathways, global repair and transcription-coupled repair (TCR). Numerous studies have shown that in human and other mammalian cell lines that the XPC protein is required for repair of DNA damage from nontranscribed DNA via global repair and the CSB protein is required for repair of lesions from transcribed DNA via TCR. Therefore, it is generally assumed that abrogating both sub-pathways with an XPC-/-/CSB-/- double mutant would eliminate all nucleotide excision repair. Here we describe the construction of three different XPC-/-/CSB-/- human cell lines that, contrary to expectations, perform TCR. The XPC and CSB genes were mutated in cell lines derived from Xeroderma Pigmentosum patients as well as from normal human fibroblasts and repair was analyzed at the whole genome level using the very sensitive XR-seq method. As predicted, XPC-/- cells exhibited only TCR and CSB-/- cells exhibited only global repair. However, the XPC-/-/CSB-/- double mutant cell lines, although having greatly reduced repair, exhibited TCR. Mutating the CSA gene to generate a triple mutant XPC-/-/CSB-/-/CSA-/- cell line eliminated all residual TCR activity. Together, these findings provide new insights into the mechanistic features of mammalian nucleotide excision repair.

摘要

核苷酸切除修复通过两条不同的亚途径,即全局修复和转录偶联修复(TCR),去除 UV 诱导的 DNA 损伤。许多研究表明,在人类和其他哺乳动物细胞系中,XPC 蛋白是通过全局修复修复非转录 DNA 中 DNA 损伤所必需的,CSB 蛋白是通过 TCR 修复转录 DNA 中损伤所必需的。因此,人们普遍认为,用 XPC-/-/CSB-/-双突变体阻断这两个亚途径将消除所有核苷酸切除修复。在这里,我们描述了三种不同的 XPC-/-/CSB-/-人类细胞系的构建,这些细胞系与预期相反,能够进行 TCR。XPC 和 CSB 基因在来自着色性干皮病患者的细胞系以及来自正常人类成纤维细胞的细胞系中发生突变,并使用非常敏感的 XR-seq 方法在全基因组水平上分析修复情况。如预测的那样,XPC-/-细胞仅表现出 TCR,CSB-/-细胞仅表现出全局修复。然而,XPC-/-/CSB-/-双突变体细胞系尽管修复能力大大降低,但仍表现出 TCR。突变 CSA 基因生成三重突变体 XPC-/-/CSB-/-/CSA-/-细胞系消除了所有残留的 TCR 活性。这些发现共同为哺乳动物核苷酸切除修复的机制特征提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc76/10325923/2c66b663c2a5/gkad334fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc76/10325923/4e8f6c7f5537/gkad334figgra1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc76/10325923/94cd4147145e/gkad334fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc76/10325923/6e4ac2cd11bb/gkad334fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc76/10325923/d873586b1e8a/gkad334fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc76/10325923/56316fee733f/gkad334fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc76/10325923/2d894afe0f0b/gkad334fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc76/10325923/2c66b663c2a5/gkad334fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc76/10325923/4e8f6c7f5537/gkad334figgra1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc76/10325923/94cd4147145e/gkad334fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc76/10325923/6e4ac2cd11bb/gkad334fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc76/10325923/d873586b1e8a/gkad334fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc76/10325923/56316fee733f/gkad334fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc76/10325923/2d894afe0f0b/gkad334fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc76/10325923/2c66b663c2a5/gkad334fig6.jpg

相似文献

[1]
Nucleotide excision repair in Human cell lines lacking both XPC and CSB proteins.

Nucleic Acids Res. 2023-7-7

[2]
CSB-independent, XPC-dependent transcription-coupled repair in .

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[3]
Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events.

BMC Genomics. 2021-8-6

[4]
XPC-RAD23B enhances UV-DDB binding to DNA to facilitate lesion search in nucleotide excision repair.

Nucleic Acids Res. 2025-6-6

[5]
Xeroderma Pigmentosum

1993

[6]
Cross-species investigation into the requirement of XPA for nucleotide excision repair.

Nucleic Acids Res. 2024-1-25

[7]
DNA repair synthesis following irradiation with 254-nm and 312-nm ultraviolet light is not diminished in fibroblasts from patients with dysplastic nevus syndrome.

J Cancer Res Clin Oncol. 1995

[8]
Differential ultraviolet-B-induced immunomodulation in XPA, XPC, and CSB DNA repair-deficient mice.

J Invest Dermatol. 2001-7

[9]
Expression of mitochondrial genes and DNA-repair-related nuclear genes is altered in xeroderma pigmentosum fibroblasts.

J Cancer Res Clin Oncol. 1994

[10]
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引用本文的文献

[1]
Genome-wide analysis of transcription-coupled repair reveals novel transcription events in Caenorhabditis elegans.

PLoS Genet. 2024-7

[2]
XPD stalled on cross-linked DNA provides insight into damage verification.

Nat Struct Mol Biol. 2024-10

[3]
UV damage induces production of mitochondrial DNA fragments with specific length profiles.

Genetics. 2024-7-8

[4]
Cross-species investigation into the requirement of XPA for nucleotide excision repair.

Nucleic Acids Res. 2024-1-25

[5]
UV damage induces production of mitochondrial DNA fragments with specific length profiles.

bioRxiv. 2023-11-11

[6]
Genome-wide analysis of transcription-coupled repair reveals novel transcription events in .

bioRxiv. 2024-3-29

本文引用的文献

[1]
Molecular Mechanisms of Transcription-Coupled Repair.

Annu Rev Biochem. 2023-6-20

[2]
A disease-associated XPA allele interferes with TFIIH binding and primarily affects transcription-coupled nucleotide excision repair.

Proc Natl Acad Sci U S A. 2023-3-14

[3]
CSB-independent, XPC-dependent transcription-coupled repair in .

Proc Natl Acad Sci U S A. 2022-3-1

[4]
Circadian clock, carcinogenesis, chronochemotherapy connections.

J Biol Chem. 2021-9

[5]
Genome-wide role of Rad26 in promoting transcription-coupled nucleotide excision repair in yeast chromatin.

Proc Natl Acad Sci U S A. 2020-7-20

[6]
Genome-wide single-nucleotide resolution of oxaliplatin-DNA adduct repair in drug-sensitive and -resistant colorectal cancer cell lines.

J Biol Chem. 2020-4-16

[7]
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J Biol Chem. 2019-10-17

[8]
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Nat Protoc. 2019-1

[9]
Cisplatin-DNA adduct repair of transcribed genes is controlled by two circadian programs in mouse tissues.

Proc Natl Acad Sci U S A. 2018-5-7

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Trends Biochem Sci. 2018-5

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