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通过涂覆阴离子表面活性剂的纳米级孔实现 DNA 迁移率提高 30 多倍。

Over 30-Fold Enhancement in DNA Translocation Dynamics through Nanoscale Pores Coated with an Anionic Surfactant.

机构信息

Russell Berrie Nanotechnology Institute, Technion IIT, Haifa 3200003, Israel.

Department of Biomedical Engineering, Technion IIT, Haifa 3200003, Israel.

出版信息

Nano Lett. 2023 May 24;23(10):4609-4616. doi: 10.1021/acs.nanolett.3c01096. Epub 2023 May 7.

DOI:10.1021/acs.nanolett.3c01096
PMID:37149783
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10214489/
Abstract

Solid-state nanopores (ssNPs) are single-molecule sensors capable of label-free quantification of different biomolecules, which have become highly versatile with the introduction of different surface treatments. By modulating the surface charges of the ssNP, the electro-osmotic flow (EOF) can be controlled in turn affecting the in-pore hydrodynamic forces. Herein, we demonstrate that negative charge surfactant coating to ssNPs generates EOF that slows-down DNA translocation speed by >30-fold, without deterioration of the NP noise, hence significantly improving its performances. Consequently, surfactant-coated ssNPs can be used to reliably sense short DNA fragments at high voltage bias. To shed light on the EOF phenomena inside planar ssNPs, we introduce visualization of the electrically neutral fluorescent molecule's flow, hence decoupling the electrophoretic from EOF forces. Finite elements simulations are then used to show that EOF is likely responsible for in-pore drag and size-selective capture rate. This study broadens ssNPs use for multianalyte sensing in a single device.

摘要

固态纳米孔(ssNPs)是一种单分子传感器,能够对不同的生物分子进行无标记定量,通过引入不同的表面处理,它已经变得非常多功能。通过调节 ssNP 的表面电荷,可以反过来控制电动渗流(EOF),从而影响腔内流体动力学力。本文中,我们证明了带负电荷的表面活性剂涂层 ssNPs 产生的电动渗流使 DNA 迁移速度减慢了 >30 倍,而不会降低 NP 噪声,从而显著提高了其性能。因此,带负电荷的表面活性剂涂层 ssNPs 可以用于在高电压偏置下可靠地检测短 DNA 片段。为了阐明平面 ssNPs 内的电动渗流现象,我们引入了电中性荧光分子流动的可视化,从而将电泳与电动渗流力解耦。然后使用有限元模拟表明,电动渗流可能是腔内阻力和尺寸选择性捕获率的原因。这项研究拓宽了 ssNPs 在单个设备中用于多分析物传感的用途。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f146/10214489/fb98b5fdf50a/nl3c01096_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f146/10214489/21c7864be7d1/nl3c01096_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f146/10214489/c92f68d8be60/nl3c01096_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f146/10214489/4c8aa0125022/nl3c01096_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f146/10214489/02822012cbce/nl3c01096_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f146/10214489/fb98b5fdf50a/nl3c01096_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f146/10214489/21c7864be7d1/nl3c01096_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f146/10214489/c92f68d8be60/nl3c01096_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f146/10214489/4c8aa0125022/nl3c01096_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f146/10214489/02822012cbce/nl3c01096_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f146/10214489/fb98b5fdf50a/nl3c01096_0005.jpg

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本文引用的文献

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