Université Paris-Saclay, INRAE, URGI, Versailles 78026, France.
Plant Bioinformatics Facility, Université Paris-Saclay, INRAE, BioinfOmics, Versailles 78026, France.
Database (Oxford). 2023 May 9;2023. doi: 10.1093/database/baad027.
SyntenyViewer is a public web-based tool relying on a relational database available at https://urgi.versailles.inrae.fr/synteny delivering comparative genomics data and associated reservoir of conserved genes between angiosperm species for both fundamental (evolutionary studies) and applied (translational research) applications. SyntenyViewer is made available for (i) providing comparative genomics data for seven major botanical families of flowering plants, (ii) delivering a robust catalog of 103 465 conserved genes between 44 species and inferred ancestral genomes, (iii) allowing us to investigate the evolutionary fate of ancestral genes and genomic regions in modern species through duplications, inversions, deletions, fusions, fissions and translocations, (iv) use as a tool to conduct translational research of key trait-related genes from model species to crops and (v) offering to host any comparative genomics data following simplified procedures and formats Database URL https://urgi.versailles.inrae.fr/synteny.
SyntenyViewer 是一个基于网络的公共工具,它依赖于一个关系数据库,该数据库可在 https://urgi.versailles.inrae.fr/synteny 上获得,提供被子植物物种之间的比较基因组学数据和相关的保守基因库,用于基础(进化研究)和应用(转化研究)应用。SyntenyViewer 可用于:(i) 提供 7 个主要开花植物科的比较基因组学数据,(ii) 提供 44 个物种和推断的祖先基因组之间的 103465 个保守基因的稳健目录,(iii) 允许我们通过复制、反转、缺失、融合、分裂和易位来研究祖先基因和基因组区域在现代物种中的进化命运,(iv) 用作将模型物种的关键性状相关基因转化为作物的工具,以及 (v) 提供任何符合简化程序和格式的比较基因组学数据。数据库 URL https://urgi.versailles.inrae.fr/synteny。