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新种,一种从葡萄渣中分离出的氧化甲酸盐、呼吸有机卤化物的细菌。

sp. nov., a formate-oxidizing, organohalide-respiring bacterium isolated from grape pomace.

作者信息

Cui Yiru, Li Xiuying, Yan Jun, Lv Yan, Jin Huijuan, Wang Jingjing, Chen Gao, Kara-Murdoch Fadime, Yang Yi, Löffler Frank E

机构信息

Key Laboratory of Pollution Ecology and Environmental Engineering, Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, Liaoning 110016, PR China.

University of Chinese Academy of Sciences, Beijing 100049, PR China.

出版信息

Int J Syst Evol Microbiol. 2023 May;73(5). doi: 10.1099/ijsem.0.005881.

Abstract

A strictly anaerobic, organohalide-respiring bacterium, designated strain GP, was characterized using a polyphasic approach. GP is Gram-stain-negative, non-spore-forming and non-motile. Cells are irregular cocci ranging between 0.6 and 0.9 µm in diameter. GP couples growth with the reductive dechlorination of 1,2-dichloroethane, vinyl chloride and all polychlorinated ethenes, except tetrachloroethene, yielding ethene and inorganic chloride as dechlorination end products. H and formate serve as electron donors for organohalide respiration in the presence of acetate as carbon source. Major cellular fatty acids include C, Cω9, C, C and C. On the basis of 16S rRNA gene phylogeny, GP is most closely related to NSZ-14 and IP3-3 with 99.8 and 97.4 % sequence identities, respectively. Genome-wide pairwise comparisons based on average nucleotide identity, average amino acid identity and digital DNA-DNA hybridization do not support the inclusion of GP in previously described species of the genus with validly published names. On the basis of phylogenetic, physiological and phenotypic traits, GP represents a novel species within the genus , for which the name sp. nov. is proposed. The type strain is GP (= JCM 39172 = CGMCC 1.17861).

摘要

使用多相分类方法对一株严格厌氧、以有机卤化物为呼吸底物的细菌(命名为菌株GP)进行了表征。GP革兰氏染色阴性,不产芽孢,无运动性。细胞为不规则球菌,直径在0.6至0.9μm之间。GP以1,2 - 二氯乙烷、氯乙烯以及除四氯乙烯之外的所有多氯代乙烯的还原脱氯作用与生长耦合,产生乙烯和无机氯作为脱氯终产物。在以乙酸盐作为碳源的情况下,氢气和甲酸盐作为有机卤化物呼吸的电子供体。主要细胞脂肪酸包括C、Cω9、C、C和C。基于16S rRNA基因系统发育分析,GP与NSZ - 14和IP3 - 3关系最为密切,序列同一性分别为99.8%和97.4%。基于平均核苷酸同一性、平均氨基酸同一性和数字DNA - DNA杂交的全基因组成对比较不支持将GP归入先前已有效发表名称的该属物种。基于系统发育、生理和表型特征,GP代表该属内的一个新物种,为此提出新物种名称sp. nov.。模式菌株为GP(= JCM 39172 = CGMCC 1.17861)。

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