Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, 277-8564, Japan.
Research Centre for Bioscience and Nanoscience, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokosuka, 237-0061, Japan.
ISME J. 2023 Aug;17(8):1340-1350. doi: 10.1038/s41396-023-01424-x. Epub 2023 May 23.
Dinitrogen (N) fixation is the major source of reactive nitrogen in the ocean and has been considered to occur specifically in low-latitude oligotrophic oceans. Recent studies have shown that N fixation also occurs in the polar regions and thus is a global process, although the physiological and ecological characteristics of polar diazotrophs are not yet known. Here, we successfully reconstructed diazotroph genomes, including that of cyanobacterium UCYN-A (Candidatus 'Atelocyanobacterium thalassa'), from metagenome data corresponding to 111 samples isolated from the Arctic Ocean. These diazotrophs were highly abundant in the Arctic Ocean (max., 1.28% of the total microbial community), suggesting that they have important roles in the Arctic ecosystem and biogeochemical cycles. Further, we show that diazotrophs within genera Arcobacter, Psychromonas, and Oceanobacter are prevalent in the <0.2 µm fraction in the Arctic Ocean, indicating that current methods cannot capture their N fixation. Diazotrophs in the Arctic Ocean were either Arctic-endemic or cosmopolitan species from their global distribution patterns. Arctic-endemic diazotrophs, including Arctic UCYN-A, were similar to low-latitude-endemic and cosmopolitan diazotrophs in genome-wide function, however, they had unique gene sets (e.g., diverse aromatics degradation genes), suggesting adaptations to Arctic-specific conditions. Cosmopolitan diazotrophs were generally non-cyanobacteria and commonly had the gene that encodes the cold-inducible RNA chaperone, which presumably makes their survival possible even in deep, cold waters of global ocean and polar surface waters. This study shows global distribution pattern of diazotrophs with their genomes and provides clues to answering the question of how diazotrophs can inhabit polar waters.
固氮作用是海洋中活性氮的主要来源,过去一直认为这种作用只发生在低纬度贫营养的海洋中。最近的研究表明,固氮作用也发生在极地,因此是一个全球性的过程,尽管极地固氮生物的生理和生态特征尚不清楚。在这里,我们成功地从与从北冰洋中分离出的 111 个样本相对应的宏基因组数据中重建了固氮生物的基因组,包括蓝藻 UCYN-A(候选“Atelocyanobacterium thalassa”)的基因组。这些固氮生物在北冰洋中丰度很高(最高可达总微生物群落的 1.28%),这表明它们在北极生态系统和生物地球化学循环中具有重要作用。此外,我们还表明,弧菌属、Psychromonas 属和海洋杆菌属中的固氮生物在北冰洋的<0.2 μm 级分中很普遍,这表明目前的方法无法捕捉到它们的固氮作用。北冰洋中的固氮生物要么是从全球分布模式来看是北极特有的,要么是世界性的物种。北极特有的固氮生物,包括北极 UCYN-A,在全基因组功能上与低纬度特有的和世界性的固氮生物相似,但它们具有独特的基因集(例如,多样化的芳香族降解基因),表明它们适应了北极特有的条件。世界性的固氮生物通常不是蓝藻,并且通常具有编码冷诱导 RNA 伴侣的基因,这大概使它们即使在全球海洋的深冷水中和极地表面水中也能存活。本研究展示了具有基因组的固氮生物的全球分布模式,并为回答固氮生物如何能栖息在极地水域的问题提供了线索。