Department of Microbiology & Immunology, University of British Columbia, Vancouver, BC V6T 1Z4, Canada.
Department of Biology, Memorial University of Newfoundland, St. John's, NL A1C 5S7, Canada.
Genes (Basel). 2023 May 22;14(5):1124. doi: 10.3390/genes14051124.
A variety of prokaryotes produce a bacteriophage-like gene transfer agent (GTA), and the alphaproteobacterial RcGTA is a model GTA. Some environmental isolates of lack the ability to acquire genes transferred by the RcGTA (recipient capability). In this work, we investigated the reason why strain 37b4 lacks recipient capability. The RcGTA head spike fiber and tail fiber proteins have been proposed to bind extracellular oligosaccharide receptors, and strain 37b4 lacks a capsular polysaccharide (CPS). The reason why strain 37b4 lacks a CPS was unknown, as was whether the provision of a CPS to 37b4 would result in recipient capability. To address these questions, we sequenced and annotated the strain 37b4 genome and used BLAST interrogations of this genome sequence to search for homologs of genes known to be needed for recipient capability. We also created a cosmid-borne genome library from a wild-type strain, mobilized the library into 37b4, and used the cosmid-complemented strain 37b4 to identify genes needed for a gain of function, allowing for the acquisition of RcGTA-borne genes. The relative presence of CPS around a wild-type strain, 37b4, and cosmid-complemented 37b4 cells was visualized using light microscopy of stained cells. Fluorescently tagged head spike fiber and tail fiber proteins of the RcGTA particle were created and used to measure the relative binding to wild-type and 37b4 cells. We found that strain 37b4 lacks recipient capability because of an inability to bind RcGTA; the reason it is incapable of binding is that it lacks CPS, and the absence of CPS is due to the absence of genes previously shown to be needed for CPS production in another strain. In addition to the head spike fiber, we found that the tail fiber protein also binds to the CPS.
多种原核生物产生类似噬菌体的基因转移因子(GTA),而α变形菌 RcGTA 是一种模型 GTA。一些缺乏接受 RcGTA 转移基因能力的环境分离株(受体能力)。在这项工作中,我们研究了 37b4 缺乏受体能力的原因。RcGTA 头部刺突纤维和尾部纤维蛋白被提出与细胞外寡糖受体结合,而 37b4 株缺乏荚膜多糖(CPS)。37b4 株缺乏 CPS 的原因尚不清楚,是否向 37b4 株提供 CPS 是否会导致受体能力。为了解决这些问题,我们对 37b4 株的基因组进行了测序和注释,并使用 BLAST 对该基因组序列进行了检索,以搜索已知需要用于 受体能力的基因的同源物。我们还从野生型菌株中创建了携带 cosmid 的基因组文库,将文库转移到 37b4 中,并使用 cosmid 互补的 37b4 株来鉴定获得功能所需的基因,从而允许获得 RcGTA 携带的基因。使用染色细胞的明场显微镜观察野生型菌株、37b4 和 cosmid 互补的 37b4 细胞周围 CPS 的相对存在。创建了 RcGTA 颗粒的荧光标记的头部刺突纤维和尾部纤维蛋白,并用于测量与野生型和 37b4 细胞的相对结合。我们发现 37b4 株缺乏受体能力是因为它不能与 RcGTA 结合;它不能结合的原因是它缺乏 CPS,而 CPS 的缺乏是由于缺乏以前在另一株菌中显示为 CPS 产生所必需的基因。除了头部刺突纤维,我们还发现尾部纤维蛋白也与 CPS 结合。