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叶提取物衍生化合物作为潜在胆碱酯酶抑制剂的分子对接和动力学模拟方法

Molecular docking and dynamics simulation approach of leaf extract derived compounds as potential cholinesterase inhibitors.

作者信息

Hosen Md Eram, Rahman Md Sojiur, Faruqe Md Omar, Khalekuzzaman Md, Islam Md Asadul, Acharjee Uzzal Kumar, Zaman Rashed

机构信息

Professor Joarder DNA and Chromosome Research Laboratory, Department of Genetic Engineering and Biotechnology, University of Rajshahi, Rajshahi, 6205 Bangladesh.

Department of Computer Science and Engineering, University of Rajshahi, Rajshahi, 6205 Bangladesh.

出版信息

In Silico Pharmacol. 2023 May 28;11(1):14. doi: 10.1007/s40203-023-00151-7. eCollection 2023.

Abstract

The tea plant () belongs to the family Theaceae and contains many phytochemicals that are effective against various diseases, including neurodegenerative disorders. In this study, we aimed to characterize the phytochemicals present in the methanolic and n-hexane leaf extracts of using GC-MS, FTIR, and UV-visible analysis. We detected a total of 19 compounds of different chemical classes. We also performed molecular docking studies using the GC-MS detected phytochemicals, targeting acetylcholinesterase (AChE, PBD ID: 4BDT) and butyrylcholinesterase (BChE, PDB ID: 6QAB), which are responsible for the breakdown of the neurotransmitter acetylcholine (ACh). This breakdown leads to dementia and cognitive decline in Alzheimer's patients. The compounds Ergosta-7,22-dien-3-ol, (3.beta.,5.alpha.,22E)- and Benzene, 1,3-bis(1,1-dimethylethyl) showed better binding affinity against AChE, while dl-.alpha.-Tocopherol and Ergosta-7,22-dien-3-ol, (3.beta.,5.alpha.,22E)- showed better binding affinity against BChE. We determined the stability and rigidity of these best docked complexes through molecular dynamics simulation for a period of 100 ns. All complexes showed stability in terms of SASA, Rg, and hydrogen bonds, but some variations were found in the RMSD values. Our ADMET analysis revealed that all lead compounds are non-toxic. Therefore, these compounds could be potential inhibitors of AChE and BChE.

摘要

茶树()属于山茶科,含有许多对包括神经退行性疾病在内的各种疾病有效的植物化学物质。在本研究中,我们旨在通过气相色谱 - 质谱联用(GC - MS)、傅里叶变换红外光谱(FTIR)和紫外 - 可见光谱分析来表征茶树甲醇和正己烷叶提取物中存在的植物化学物质。我们总共检测到19种不同化学类别的化合物。我们还使用GC - MS检测到的植物化学物质进行了分子对接研究,目标是乙酰胆碱酯酶(AChE,PBD ID:4BDT)和丁酰胆碱酯酶(BChE,PDB ID:6QAB),它们负责神经递质乙酰胆碱(ACh)的分解。这种分解会导致阿尔茨海默病患者出现痴呆和认知能力下降。化合物麦角甾 - 7,22 - 二烯 - 3 - 醇,(3β,5α,22E) - 和苯,1,3 - 双(1,1 - 二甲基乙基)对AChE表现出更好的结合亲和力,而dl-α-生育酚和麦角甾 - 7,22 - 二烯 - 3 - 醇,(3β,5α,22E) - 对BChE表现出更好的结合亲和力。我们通过100纳秒的分子动力学模拟确定了这些最佳对接复合物的稳定性和刚性。所有复合物在溶剂可及表面积(SASA)、回转半径(Rg)和氢键方面都表现出稳定性,但在均方根偏差(RMSD)值上发现了一些变化。我们的药物代谢动力学(ADMET)分析表明,所有先导化合物都是无毒的。因此,这些化合物可能是AChE和BChE的潜在抑制剂。

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