Liu Dongnan, Cabezas Mariano, Wang Dongang, Tang Zihao, Bai Lei, Zhan Geng, Luo Yuling, Kyle Kain, Ly Linda, Yu James, Shieh Chun-Chien, Nguyen Aria, Kandasamy Karuppiah Ettikan, Sullivan Ryan, Calamante Fernando, Barnett Michael, Ouyang Wanli, Cai Weidong, Wang Chenyu
School of Computer Science, The University of Sydney, Sydney, NSW, Australia.
Brain and Mind Centre, The University of Sydney, Sydney, NSW, Australia.
Front Neurosci. 2023 May 18;17:1167612. doi: 10.3389/fnins.2023.1167612. eCollection 2023.
Federated learning (FL) has been widely employed for medical image analysis to facilitate multi-client collaborative learning without sharing raw data. Despite great success, FL's applications remain suboptimal in neuroimage analysis tasks such as lesion segmentation in multiple sclerosis (MS), due to variance in lesion characteristics imparted by different scanners and acquisition parameters.
In this work, we propose the first FL MS lesion segmentation framework via two effective re-weighting mechanisms. Specifically, a learnable weight is assigned to each local node during the aggregation process, based on its segmentation performance. In addition, the segmentation loss function in each client is also re-weighted according to the lesion volume for the data during training.
The proposed method has been validated on two FL MS segmentation scenarios using public and clinical datasets. Specifically, the case-wise and voxel-wise Dice score of the proposed method under the first public dataset is 65.20 and 74.30, respectively. On the second in-house dataset, the case-wise and voxel-wise Dice score is 53.66, and 62.31, respectively.
The Comparison experiments on two FL MS segmentation scenarios using public and clinical datasets have demonstrated the effectiveness of the proposed method by significantly outperforming other FL methods. Furthermore, the segmentation performance of FL incorporating our proposed aggregation mechanism can achieve comparable performance to that from centralized training with all the raw data.
联邦学习(FL)已被广泛应用于医学图像分析,以促进多客户端协作学习而无需共享原始数据。尽管取得了巨大成功,但由于不同扫描仪和采集参数所赋予的病变特征存在差异,FL在神经图像分析任务(如多发性硬化症(MS)病变分割)中的应用仍不尽人意。
在这项工作中,我们通过两种有效的重新加权机制提出了首个FL MS病变分割框架。具体而言,在聚合过程中根据每个本地节点的分割性能为其分配一个可学习的权重。此外,在训练期间,每个客户端的分割损失函数也根据数据的病变体积进行重新加权。
所提出的方法已在使用公共和临床数据集的两种FL MS分割场景中得到验证。具体而言,在第一个公共数据集下,所提出方法的逐例和逐体素骰子系数分别为65.20和74.30。在第二个内部数据集上,逐例和逐体素骰子系数分别为53.66和62.31。
使用公共和临床数据集在两种FL MS分割场景上进行的对比实验表明,所提出的方法通过显著优于其他FL方法而有效。此外,结合我们提出的聚合机制的FL分割性能可以达到与使用所有原始数据进行集中训练相当的性能。