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外显子组全基因组分析揭示了和其他新的认知相关基因座的作用。

Exome-wide analysis reveals role of and additional novel loci in cognition.

机构信息

Centre for Brain Research, Indian Institute of Science, Bangalore, Karnataka 560012, India.

Interdisciplinary Mathematical Sciences, Indian Institute of Science, Bangalore, Karnataka 560012, India.

出版信息

HGG Adv. 2023 May 20;4(3):100208. doi: 10.1016/j.xhgg.2023.100208. eCollection 2023 Jul 13.


DOI:10.1016/j.xhgg.2023.100208
PMID:37305557
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10248556/
Abstract

Cognitive functioning is heritable, with metabolic risk factors known to accelerate age-associated cognitive decline. Identifying genetic underpinnings of cognition is thus crucial. Here, we undertake single-variant and gene-based association analyses upon 6 neurocognitive phenotypes across 6 cognition domains in whole-exome sequencing data from 157,160 individuals of the UK Biobank cohort to expound the genetic architecture of human cognition. We report 20 independent loci associated with 5 cognitive domains while controlling for isoform-carrier status and metabolic risk factors; 18 of which were not previously reported, and implicated genes relating to oxidative stress, synaptic plasticity and connectivity, and neuroinflammation. A subset of significant hits for cognition indicates mediating effects via metabolic traits. Some of these variants also exhibit pleiotropic effects on metabolic traits. We further identify previously unknown interactions of variants with (rs34949484 and others, suggestively significant), (rs146766120; pAla25Thr, significant), and (rs111522866, significant), controlling for lipid and glycemic risks. Our gene-based analysis also suggests that and have plausible roles along shared pathways of amyloid beta (Aβ) and lipid and/or glucose metabolism in affecting complex processing speed and visual attention. In addition, we report pairwise suggestive interactions of variants harbored in these genes with affecting visual attention. Our report based on this large-scale exome-wide study highlights the effects of neuronal genes, such as , , and other genomic loci, thus providing further evidence of the genetic underpinnings for cognition during aging.

摘要

认知功能是可遗传的,已知代谢风险因素会加速与年龄相关的认知能力下降。因此,确定认知的遗传基础至关重要。在这里,我们在 UK Biobank 队列的全外显子组测序数据中,对 6 个认知领域的 6 个神经认知表型进行了单变体和基于基因的关联分析,以阐述人类认知的遗传结构。我们报告了 20 个与 5 个认知领域相关的独立基因座,同时控制了同工型载体状态和代谢风险因素;其中 18 个以前没有报道过,涉及与氧化应激、突触可塑性和连接以及神经炎症相关的基因。认知的显著命中的一部分表明通过代谢特征产生中介效应。其中一些变体也对代谢特征表现出多效性影响。我们进一步确定了认知的一些以前未知的与变体的相互作用,这些变体与 (rs34949484 和其他,暗示显著)、 (rs146766120;pAla25Thr,显著)和 (rs111522866,显著)相互作用,控制了脂质和血糖风险。我们的基于基因的分析还表明, 和 沿着淀粉样蛋白 β(Aβ)和脂质和/或葡萄糖代谢的共享途径具有合理的作用,从而影响复杂的处理速度和视觉注意力。此外,我们还报告了这些基因中携带的变体与 之间的成对提示性相互作用,影响视觉注意力。我们基于这项大规模外显子组研究的报告突出了神经元基因(如 、 和其他基因组位点)的作用,从而为衰老过程中的认知遗传基础提供了进一步的证据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a2c/10248556/5abb72309973/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a2c/10248556/d24bcc17102e/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a2c/10248556/c54f245fac2b/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a2c/10248556/96341f84fcd5/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a2c/10248556/55b9e5d68e9f/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a2c/10248556/5abb72309973/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a2c/10248556/d24bcc17102e/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a2c/10248556/c54f245fac2b/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a2c/10248556/96341f84fcd5/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a2c/10248556/55b9e5d68e9f/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a2c/10248556/5abb72309973/gr5.jpg

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本文引用的文献

[1]
KEGG for taxonomy-based analysis of pathways and genomes.

Nucleic Acids Res. 2023-1-6

[2]
Genome-wide Association Study Shows That Executive Functioning Is Influenced by GABAergic Processes and Is a Neurocognitive Genetic Correlate of Psychiatric Disorders.

Biol Psychiatry. 2023-1-1

[3]
Whole genome analysis in APOE4 homozygotes identifies the DAB1-RELN pathway in Alzheimer's disease pathogenesis.

Neurobiol Aging. 2022-11

[4]
Impact of IL-21-associated peripheral and brain crosstalk on the Alzheimer's disease neuropathology.

Cell Mol Life Sci. 2022-6-1

[5]
Genome-Wide Association Study of Alzheimer's Disease Brain Imaging Biomarkers and Neuropsychological Phenotypes in the European Medical Information Framework for Alzheimer's Disease Multimodal Biomarker Discovery Dataset.

Front Aging Neurosci. 2022-3-21

[6]
Role and therapeutic implications of protein glycosylation in neuroinflammation.

Trends Mol Med. 2022-4

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Revealing the Molecular Mechanisms of Alzheimer's Disease Based on Network Analysis.

Int J Mol Sci. 2021-10-26

[8]
APOE genotype moderates the relationship between LRP1 polymorphism and cognition across the Alzheimer's disease spectrum via disturbing default mode network.

CNS Neurosci Ther. 2021-11

[9]
Isoform-specific dysregulation of AMP-activated protein kinase signaling in a non-human primate model of Alzheimer's disease.

Neurobiol Dis. 2021-10

[10]
Imbalanced autophagy causes synaptic deficits in a human model for neurodevelopmental disorders.

Autophagy. 2022-2

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