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阿拉伯人群生物标志物、有丝分裂基因组和遗传疾病的异质性,特别强调大规模全外显子组测序。

Heterogeneity in biomarkers, mitogenome and genetic disorders of the Arab population with special emphasis on large-scale whole-exome sequencing.

作者信息

Borgio J Francis

机构信息

Department of Genetic Research, Institute for Research and Medical Consultations (IRMC), Imam Abdulrahman Bin Faisal University, Dammam, Saudi Arabia.

出版信息

Arch Med Sci. 2021 Dec 27;19(3):765-783. doi: 10.5114/aoms/145370. eCollection 2023.

Abstract

More than 25 million DNA variations have been discovered as novel including major alleles from the Arab population. Exome studies on the Saudi genome discovered > 3000 novel nucleotide variants associated with > 1200 rare genetic disorders. Reclassification of many pathogenic variants in the Human Gene Mutation Database and ClinVar Database as benign through the Arab database facilitates building a detailed and comprehensive map of the human morbid genome. Intellectual disability comes first with the combined and observed carrier frequency of 0.06779 among Saudi Arabians; retinal dystrophy is the next highest. Genome studies have discovered interesting novel candidate disease marker variations in many genes from consanguineous families. More than 7 pathogenic variants in the gene are prominently associated with the etiology of developmental delay/intellectual impairment in Arab ancestries. Advances in large-scale genome studies open a new outlook on Mendelian genes and disorders. In the past half-dozen years, candidate genes of intellectual disability, neurogenetic disorders, blood and bleeding disorders and rare genetic diseases have been well documented through genomic medicine studies in combination with advanced computational biology applications. The Arab mitogenome exposed hundreds of variations in the mtDNA genome and ancestral sharing with Africa, the Near East and East Asia and its association with obesity. These recent discoveries in disease markers and molecular genetics of the Arab population will have a positive impact towards supporting genetic counsellors on reaching consanguineous families to manage stress linked to genetics and precision medicine. This narrative review summarizes the advances in molecular medical genetics and recent discoveries on pathogenic variants. Despite the fact that these initiatives are targeting the genetics and genomics of disorders prevalent in Arab populations, a lack of complete cooperation across the projects needed to be revisited to uncover the Arab population's prominent disease markers. This shows that further study is needed in genomics to fully comprehend the molecular abnormalities and associated pathogenesis that cause inherited disorders in Arab ancestries.

摘要

已发现超过2500万个DNA变异是新的,包括来自阿拉伯人群的主要等位基因。对沙特基因组的外显子组研究发现了3000多个与1200多种罕见遗传疾病相关的新核苷酸变异。通过阿拉伯数据库将人类基因突变数据库和临床变异数据库中的许多致病变异重新分类为良性,有助于构建人类病态基因组的详细和全面图谱。智力残疾位居首位,在沙特阿拉伯人中综合观察到的携带频率为0.06779;视网膜营养不良次之。基因组研究在近亲家庭的许多基因中发现了有趣的新候选疾病标志物变异。该基因中超过7个致病变异与阿拉伯血统中发育迟缓/智力障碍的病因显著相关。大规模基因组研究的进展为孟德尔基因和疾病开辟了新的前景。在过去的六年里,通过基因组医学研究结合先进的计算生物学应用,对智力残疾、神经遗传疾病、血液和出血性疾病以及罕见遗传疾病的候选基因进行了充分记录。阿拉伯线粒体基因组揭示了线粒体DNA基因组中的数百种变异,以及与非洲、近东和东亚的祖先共享情况及其与肥胖的关联。阿拉伯人群在疾病标志物和分子遗传学方面的这些最新发现,将对支持遗传咨询师接触近亲家庭以管理与遗传学和精准医学相关的压力产生积极影响。这篇叙述性综述总结了分子医学遗传学的进展以及致病变异的最新发现。尽管这些举措针对的是阿拉伯人群中普遍存在的疾病的遗传学和基因组学,但需要重新审视各项目之间缺乏充分合作的问题,以发现阿拉伯人群突出的疾病标志物。这表明在基因组学方面需要进一步研究,以全面理解导致阿拉伯血统遗传性疾病的分子异常和相关发病机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce5b/10259412/ad7d513982bc/AMS-19-3-145370-g001.jpg

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