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基于机器学习的抗病毒肽预测模型的最新进展

Recent Advances in Machine Learning-Based Models for Prediction of Antiviral Peptides.

作者信息

Ali Farman, Kumar Harish, Alghamdi Wajdi, Kateb Faris A, Alarfaj Fawaz Khaled

机构信息

Sarhad University of Science and Information Technology Peshawar, Mardan Campus, Khyber Pakhtunkhwa, Pakistan.

Department of Computer Science, College of Computer Science, King Khalid University, Abha, Saudi Arabia.

出版信息

Arch Comput Methods Eng. 2023 Apr 29:1-12. doi: 10.1007/s11831-023-09933-w.

DOI:10.1007/s11831-023-09933-w
PMID:37359746
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10148704/
Abstract

Viruses have killed and infected millions of people across the world. It causes several chronic diseases like COVID-19, HIV, and hepatitis. To cope with such diseases and virus infections, antiviral peptides (AVPs) have been applied in the design of drugs. Keeping in view the significant role in pharmaceutical industry and other research fields, identification of AVPs is highly indispensable. In this connection, experimental and computational methods were proposed to identify AVPs. However, more accurate predictors for boosting AVPs identification are highly desirable. This work presents a thorough study and reports the available predictors of AVPs. We explained applied datasets, feature representation approaches, classification algorithms, and evaluation parameters of performance. In this study, the limitations of the existing studies and the best methods were emphasized. Provided the pros and cons of the applied classifiers. The future insights demonstrate efficient feature encoding approaches, best feature optimization schemes, and effective classification techniques that can improve the performance of novel method for accurate prediction of AVPs.

摘要

病毒已在全球造成数百万人死亡和感染。它会引发多种慢性疾病,如新冠病毒、艾滋病毒和肝炎。为应对此类疾病和病毒感染,抗病毒肽(AVP)已被应用于药物设计中。鉴于其在制药行业和其他研究领域的重要作用,识别AVP是非常必要的。在这方面,人们提出了实验和计算方法来识别AVP。然而,非常需要更准确的预测器来促进AVP的识别。这项工作进行了全面研究并报告了现有的AVP预测器。我们解释了应用的数据集、特征表示方法、分类算法和性能评估参数。在这项研究中,强调了现有研究的局限性和最佳方法。提供了所应用分类器的优缺点。未来的见解展示了有效的特征编码方法、最佳的特征优化方案和有效的分类技术,这些可以提高准确预测AVP的新方法的性能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ea1/10148704/198e6c227f30/11831_2023_9933_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ea1/10148704/0d1dec46037f/11831_2023_9933_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ea1/10148704/c22cc1c9dd4c/11831_2023_9933_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ea1/10148704/aff2801929da/11831_2023_9933_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ea1/10148704/6fb0a6841e4c/11831_2023_9933_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ea1/10148704/6c79792d6b26/11831_2023_9933_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ea1/10148704/198e6c227f30/11831_2023_9933_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ea1/10148704/0d1dec46037f/11831_2023_9933_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ea1/10148704/c22cc1c9dd4c/11831_2023_9933_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ea1/10148704/aff2801929da/11831_2023_9933_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ea1/10148704/6fb0a6841e4c/11831_2023_9933_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ea1/10148704/6c79792d6b26/11831_2023_9933_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9ea1/10148704/198e6c227f30/11831_2023_9933_Fig6_HTML.jpg

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