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MediNet:基于MediNet医学视觉数据库的迁移学习方法。

MediNet: transfer learning approach with MediNet medical visual database.

作者信息

Reis Hatice Catal, Turk Veysel, Khoshelham Kourosh, Kaya Serhat

机构信息

Department of Geomatics Engineering, Gumushane University, 2900 Gumushane, Turkey.

Department of Computer Engineering, University of Harran, Sanliurfa, Turkey.

出版信息

Multimed Tools Appl. 2023 Mar 20:1-44. doi: 10.1007/s11042-023-14831-1.

Abstract

The rapid development of machine learning has increased interest in the use of deep learning methods in medical research. Deep learning in the medical field is used in disease detection and classification problems in the clinical decision-making process. Large amounts of labeled datasets are often required to train deep neural networks; however, in the medical field, the lack of a sufficient number of images in datasets and the difficulties encountered during data collection are among the main problems. In this study, we propose MediNet, a new 10-class visual dataset consisting of Rontgen (X-ray), Computed Tomography (CT), Magnetic Resonance Imaging (MRI), Ultrasound, and Histopathological images such as calcaneal normal, calcaneal tumor, colon benign colon adenocarcinoma, brain normal, brain tumor, breast benign, breast malignant, chest normal, chest pneumonia. AlexNet, VGG19-BN, Inception V3, DenseNet 121, ResNet 101, EfficientNet B0, Nested-LSTM + CNN, and proposed RdiNet deep learning algorithms are used in the transfer learning for pre-training and classification application. Transfer learning aims to apply previously learned knowledge in a new task. Seven algorithms were trained with the MediNet dataset, and the models obtained from these algorithms, namely feature vectors, were recorded. Pre-training models were used for classification studies on chest X-ray images, diabetic retinopathy, and Covid-19 datasets with the transfer learning technique. In performance measurement, an accuracy of 94.84% was obtained in the traditional classification study for the InceptionV3 model in the classification study performed on the Chest X-Ray Images dataset, and the accuracy was increased 98.71% after the transfer learning technique was applied. In the Covid-19 dataset, the classification success of the DenseNet121 model before pre-trained was 88%, while the performance after the transfer application with MediNet was 92%. In the Diabetic retinopathy dataset, the classification success of the Nested-LSTM + CNN model before pre-trained was 79.35%, while the classification success was 81.52% after the transfer application with MediNet. The comparison of results obtained from experimental studies observed that the proposed method produced more successful results.

摘要

机器学习的快速发展激发了人们对在医学研究中使用深度学习方法的兴趣。医学领域的深度学习用于临床决策过程中的疾病检测和分类问题。训练深度神经网络通常需要大量带标签的数据集;然而,在医学领域,数据集中缺乏足够数量的图像以及数据收集过程中遇到的困难是主要问题。在本研究中,我们提出了MediNet,这是一个新的10类视觉数据集,由伦琴(X射线)、计算机断层扫描(CT)、磁共振成像(MRI)、超声以及组织病理学图像组成,如跟骨正常、跟骨肿瘤、结肠良性、结肠腺癌、脑正常、脑肿瘤、乳腺良性、乳腺恶性、胸部正常、胸部肺炎。AlexNet、VGG19 - BN、Inception V3、DenseNet 121、ResNet 101、EfficientNet B0、Nested - LSTM + CNN以及提出的RdiNet深度学习算法用于迁移学习中的预训练和分类应用。迁移学习旨在将先前学到的知识应用于新任务。使用MediNet数据集对七种算法进行了训练,并记录了从这些算法获得的模型,即特征向量。预训练模型通过迁移学习技术用于胸部X光图像、糖尿病视网膜病变和新冠病毒-19数据集的分类研究。在性能测量中,在胸部X光图像数据集上进行的分类研究中,InceptionV3模型在传统分类研究中的准确率为94.84%,应用迁移学习技术后准确率提高到98.71%。在新冠病毒-19数据集中,预训练前DenseNet121模型的分类成功率为88%,而使用MediNet进行迁移应用后的性能为92%。在糖尿病视网膜病变数据集中,预训练前Nested - LSTM + CNN模型的分类成功率为79.35%,使用MediNet进行迁移应用后的分类成功率为81.52%。实验研究结果的比较表明,所提出的方法产生了更成功的结果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f30a/10025796/ae7b00c490e6/11042_2023_14831_Fig1_HTML.jpg

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