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使用简单回归方法估计疫情早期的传播方向:意大利北部非洲猪瘟研究

Estimating the Directional Spread of Epidemics in Their Early Stages Using a Simple Regression Approach: A Study on African Swine Fever in Northern Italy.

作者信息

Gervasi Vincenzo, Sordilli Marco, Loi Federica, Guberti Vittorio

机构信息

Istituto Superiore per la Protezione e la Ricerca Ambientale, Via Ca' Fornacetta, 9, 40064 Ozzano Emilia, Italy.

Direzione Generale Sanità Animale e Farmaci Veterinari, Ministero della Salute, Via Giorgio Ribotta, 5, 00144 Roma, Italy.

出版信息

Pathogens. 2023 Jun 7;12(6):812. doi: 10.3390/pathogens12060812.

DOI:10.3390/pathogens12060812
PMID:37375502
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10305390/
Abstract

The early identification of the spreading patterns of an epidemic infectious disease is an important first step towards the adoption of effective interventions. We developed a simple regression-based method to estimate the directional speed of a disease's spread, which can be easily applied with a limited dataset. We tested the method using simulation tools, then applied it on a real case study of an African Swine Fever (ASF) outbreak identified in late 2021 in northwestern Italy. Simulations showed that, when carcass detection rates were <0.1, the model produced negatively biased estimates of the ASF-affected area, with the average bias being about -10%. When detection rates were >0.1, the model produced asymptotically unbiased and progressively more predictable estimates. The model produced rather different estimates of ASF's spreading speed in different directions of northern Italy, with the average speed ranging from 33 to 90 m/day. The resulting ASF-infected areas of the outbreak were estimated to be 2216 km, about 80% bigger than the ones identified only thorough field-collected carcasses. Additionally, we estimated that the actual initial date of the ASF outbreak was 145 days earlier than the day of first notification. We recommend the use of this or similar inferential tools as a quick, initial way to assess an epidemic's patterns in its early stages and inform quick and timely management actions.

摘要

早期识别流行性传染病的传播模式是采取有效干预措施的重要第一步。我们开发了一种基于简单回归的方法来估计疾病传播的方向速度,该方法可以在有限的数据集上轻松应用。我们使用模拟工具对该方法进行了测试,然后将其应用于2021年末在意大利西北部发现的非洲猪瘟(ASF)疫情的实际案例研究中。模拟结果表明,当尸体检测率<0.1时,该模型对受ASF影响区域的估计产生负偏差,平均偏差约为-10%。当检测率>0.1时,该模型产生渐近无偏且预测性逐渐增强的估计。该模型对意大利北部不同方向的ASF传播速度产生了相当不同的估计,平均速度范围为33至90米/天。此次疫情导致的ASF感染区域估计为2216平方公里,比仅通过实地收集尸体确定的区域大约80%。此外,我们估计ASF疫情的实际初始日期比首次通报日期早145天。我们建议使用这种或类似的推断工具作为一种快速的初始方法,以评估疫情早期阶段的模式,并为快速及时的管理行动提供信息。

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The Long-Jumping of African Swine Fever: First Genotype II Notified in Sardinia, Italy.

本文引用的文献

1
Management of a Focal Introduction of ASF Virus in Wild Boar: The Belgian Experience.野猪中非洲猪瘟病毒局部传入的管理:比利时的经验
Pathogens. 2023 Jan 17;12(2):152. doi: 10.3390/pathogens12020152.
2
Estimation of R for the Spread of the First ASF Epidemic in Italy from Fresh Carcasses.从新鲜尸体估计意大利首次 ASF 疫情的 R 值。
Viruses. 2022 Oct 12;14(10):2240. doi: 10.3390/v14102240.
3
January 2022: Index case of new African Swine Fever incursion in mainland Italy.2022年1月:意大利大陆出现新的非洲猪瘟疫情首例病例。
意大利撒丁岛首例 II 型基因非洲猪瘟疫情。
Viruses. 2023 Dec 23;16(1):32. doi: 10.3390/v16010032.
Transbound Emerg Dis. 2022 Jul;69(4):1707-1711. doi: 10.1111/tbed.14584. Epub 2022 May 31.
4
Combining hunting and intensive carcass removal to eradicate African swine fever from wild boar populations.结合狩猎和密集的尸体清除来根除野猪种群中的非洲猪瘟。
Prev Vet Med. 2022 Jun;203:105633. doi: 10.1016/j.prevetmed.2022.105633. Epub 2022 Mar 29.
5
Targeting the search of African swine fever-infected wild boar carcasses: A tool for early detection.针对非洲猪瘟感染野猪尸体的搜索:一种早期检测工具。
Transbound Emerg Dis. 2022 Sep;69(5):e1682-e1692. doi: 10.1111/tbed.14504. Epub 2022 Mar 16.
6
African swine fever endemic persistence in wild boar populations: Key mechanisms explored through modelling.非洲猪瘟在野猪种群中的地方性持续存在:通过建模探索关键机制。
Transbound Emerg Dis. 2021 Sep;68(5):2812-2825. doi: 10.1111/tbed.14194. Epub 2021 Jul 13.
7
Mechanistic modelling of African swine fever: A systematic review.非洲猪瘟的机理模型:系统综述
Prev Vet Med. 2021 Apr 18;191:105358. doi: 10.1016/j.prevetmed.2021.105358.
8
ASF Exit Strategy: Providing cumulative evidence of the absence of African swine fever virus circulation in wild boar populations using standard surveillance measures.非洲猪瘟退出策略:利用标准监测措施,提供野猪种群中不存在非洲猪瘟病毒传播的累积证据。
EFSA J. 2021 Mar 3;19(3):e06419. doi: 10.2903/j.efsa.2021.6419. eCollection 2021 Mar.
9
Standardized Methodology for Target Surveillance against African Swine Fever.非洲猪瘟目标监测标准化方法
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