利用N6-甲基腺苷相关长链非编码RNA构建结肠癌的新型特征并预测其免疫格局
Constructing a novel signature and predicting the immune landscape of colon cancer using N6-methylandenosine-related lncRNAs.
作者信息
Wang Yongfeng, Zhang Dongzhi, Li Yuxi, Wu Yue, Ma Haizhong, Jiang Xianglai, Fu Liangyin, Zhang Guangming, Wang Haolan, Liu Xingguang, Cai Hui
机构信息
The First Clinical Medical College of Lanzhou University, Lanzhou, Gansu, China.
General Surgery Clinical Medical Center, Gansu Provincial Hospital, Lanzhou, Gansu, China.
出版信息
Front Genet. 2023 Jun 16;14:906346. doi: 10.3389/fgene.2023.906346. eCollection 2023.
Colon cancer (CC) is a prevalent malignant tumor that affects people all around the world. In this study, N6-methylandenosine-related long non-coding RNAs (m6A-related lncRNAs) in 473 colon cancers and 41 adjacent tissues of CC patients from The Cancer Genome Atlas (TCGA) were investigated. The Pearson correlation analysis was conducted to examine the m6A-related lncRNAs, and the univariate Cox regression analysis was performed to screen 38 prognostic m6A-related lncRNAs. The least absolute shrinkage and selection operator (LASSO) regression analysis were carried out on 38 prognostic lncRNAs to develop a 14 m6A-related lncRNAs prognostic signature (m6A-LPS) in CC. The availability of the m6A-LPS was evaluated using the Kaplan-Meier and Receiver Operating Characteristic (ROC) curves. Three m6A modification patterns with significantly different N stages, survival time, and immune landscapes were identified. It has been discovered that the m6A-LPS, which is based on 14 m6A-related lncRNAs (), may represent a new, promising biomarker with great potential. It was re-evaluated in terms of survival rate, clinical features, tumor infiltration immune cells, biomarkers related to Immune Checkpoint Inhibitors (ICIs), and chemotherapeutic drug efficacy. The m6A-LPS has been revealed to be a novel potential and promising predictor for evaluating the prognosis of CC patients. This study revealed that the risk signature is a promising predictive indicator that may provide more accurate clinical applications in CC therapeutics and enable effective therapy strategies for clinicians.
结肠癌(CC)是一种在全球范围内影响人们的常见恶性肿瘤。在本研究中,对来自癌症基因组图谱(TCGA)的473例结肠癌及41例CC患者的相邻组织中的N6-甲基腺苷相关长链非编码RNA(m6A相关lncRNA)进行了研究。进行Pearson相关性分析以检测m6A相关lncRNA,并进行单变量Cox回归分析以筛选出38个预后m6A相关lncRNA。对38个预后lncRNA进行最小绝对收缩和选择算子(LASSO)回归分析,以建立CC中14个m6A相关lncRNA预后特征(m6A-LPS)。使用Kaplan-Meier曲线和受试者工作特征(ROC)曲线评估m6A-LPS的有效性。鉴定出三种具有显著不同N分期、生存时间和免疫格局的m6A修饰模式。已发现基于14个m6A相关lncRNA的m6A-LPS可能代表一种具有巨大潜力的新的、有前景的生物标志物。从生存率、临床特征、肿瘤浸润免疫细胞、与免疫检查点抑制剂(ICI)相关的生物标志物以及化疗药物疗效方面对其进行了重新评估。m6A-LPS已被证明是评估CC患者预后的一种新型潜在且有前景的预测指标。本研究表明,风险特征是一种有前景的预测指标,可能在CC治疗中提供更准确的临床应用,并为临床医生提供有效的治疗策略。
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