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V.PhyloMaker2: An updated and enlarged R package that can generate very large phylogenies for vascular plants.V.PhyloMaker2:一个经过更新和扩充的R软件包,可生成用于维管植物的非常大型的系统发育树。
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4
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Glob Chang Biol. 2022 Oct;28(19):5683-5694. doi: 10.1111/gcb.16360. Epub 2022 Aug 4.
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Are phylogenies resolved at the genus level appropriate for studies on phylogenetic structure of species assemblages?在属级水平上解析的系统发育树是否适用于物种组合的系统发育结构研究?
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Darwin's naturalization conundrum can be explained by spatial scale.达尔文的自然选择困惑可以用空间尺度来解释。
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中国非本土植物在引入-归化-入侵连续统中的系统发育亲缘关系模式。

Patterns of phylogenetic relatedness of non-native plants across the introduction-naturalization-invasion continuum in China.

作者信息

Qian Hong

机构信息

CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China.

Research and Collections Center, Illinois State Museum, 1011 East Ash Street, Springfield, IL 62703, USA.

出版信息

Plant Divers. 2022 Dec 19;45(2):169-176. doi: 10.1016/j.pld.2022.12.005. eCollection 2023 Mar.

DOI:10.1016/j.pld.2022.12.005
PMID:37069929
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10105130/
Abstract

Human activities have caused the exchange of species among different parts of the world. When introduced species become naturalized and invasive, they may cause great negative impacts on the environment and human societies, and pose significant threats to biodiversity and ecosystem structure. Knowledge on phylogenetic relatedness between native and non-native species and among non-native species at different stages of species invasion may help for better understanding the drivers of species invasion. Here, I analyze a comprehensive data set including both native and non-native angiosperm species in China to determine phylogenetic relatedness of introduced species across a full invasion continuum (from introduction through naturalization to invasion). This study found that (1) introduced plants are a phylogenetically clustered subset of overall (i.e. native plus non-native) angiosperm flora, (2) naturalized plants are a phylogenetically clustered subset of introduced plants, and (3) invasive plants are a phylogenetically clustered subset of naturalized plants. These patterns hold regardless of spatial scales examined (i.e. national versus provincial scale) and whether basal- or tip-weighted metric of phylogenetic relatedness is considered. These findings are consistent with Darwin's preadaptation hypothesis.

摘要

人类活动导致了物种在世界不同地区之间的交换。当外来物种归化并成为入侵物种时,它们可能会对环境和人类社会造成巨大的负面影响,并对生物多样性和生态系统结构构成重大威胁。了解本地物种与非本地物种之间以及物种入侵不同阶段的非本地物种之间的系统发育相关性,可能有助于更好地理解物种入侵的驱动因素。在此,我分析了一个综合数据集,其中包括中国的本地和非本地被子植物物种,以确定引入物种在整个入侵连续体(从引入到归化再到入侵)中的系统发育相关性。本研究发现:(1)引入植物是整个(即本地加非本地)被子植物区系中系统发育聚类的一个子集;(2)归化植物是引入植物中系统发育聚类的一个子集;(3)入侵植物是归化植物中系统发育聚类的一个子集。无论所考察的空间尺度如何(即国家尺度与省级尺度),也无论考虑的是系统发育相关性的基部加权还是末端加权指标,这些模式都成立。这些发现与达尔文的预适应假说一致。