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鉴定铜死亡相关 lncRNA 预测宫颈癌的预后和免疫治疗反应。

Identification of cuproptosis-related lncRNA for predicting prognosis and immunotherapeutic response in cervical cancer.

机构信息

School of Public Health, Nanchang University, Nanchang, 330006, Jiangxi, People's Republic of China.

Department of General Surgery, The First Affiliated Hospital of Nanchang University, Nanchang, 330006, People's Republic of China.

出版信息

Sci Rep. 2023 Jul 3;13(1):10697. doi: 10.1038/s41598-023-37898-0.

Abstract

Patients diagnosed with advanced cervical cancer (CC) have poor prognosis after primary treatment, and there is a lack of biomarkers for predicting patients with an increased risk of recurrence of CC. Cuproptosis is reported to play a role in tumorigenesis and progression. However, the clinical impacts of cuproptosis-related lncRNAs (CRLs) in CC remain largely unclear. Our study attempted to identify new potential biomarkers to predict prognosis and response to immunotherapy with the aim of improving this situation. The transcriptome data, MAF files, and clinical information for CC cases were obtained from the cancer genome atlas, and Pearson correlation analysis was utilized to identify CRLs. In total, 304 eligible patients with CC were randomly assigned to training and test groups. LASSO regression and multivariate Cox regression were performed to construct a cervical cancer prognostic signature based on cuproptosis-related lncRNAs. Afterwards, we generated Kaplan-Meier curves, receiver operating characteristic curves and nomograms to verify the ability to predict prognosis of patients with CC. Genes for assessing differential expression among risk subgroups were also evaluated by functional enrichment analysis. Immune cell infiltration and the tumour mutation burden were analysed to explore the underlying mechanisms of the signature. Furthermore, the potential value of the prognostic signature to predict response to immunotherapy and sensitivity to chemotherapy drugs was examined. In our study, a risk signature containing eight cuproptosis-related lncRNAs (AL441992.1, SOX21-AS1, AC011468.3, AC012306.2, FZD4-DT, AP001922.5, RUSC1-AS1, AP001453.2) to predict the survival outcome of CC patients was developed, and the reliability of the risk signature was appraised. Cox regression analyses indicated that the comprehensive risk score is an independent prognostic factor. Moreover, significant differences were found in progression-free survival, immune cell infiltration, therapeutic response to immune checkpoint inhibitors, and IC50 for chemotherapeutic agents between risk subgroups, suggesting that our model can be well employed to assess the clinical efficacy of immunotherapy and chemotherapy. Based on our 8-CRLs risk signature, we were able to independently assess the outcome and response to immunotherapy of CC patients, and this signature might benefit clinical decision-making for individualized treatment.

摘要

患者在接受初始治疗后,其预后较差,且缺乏预测宫颈癌(CC)患者复发风险增加的生物标志物。铜死亡被报道在肿瘤发生和进展中发挥作用。然而,铜死亡相关长链非编码 RNA(CRLs)在 CC 中的临床影响仍很大程度上不清楚。本研究试图寻找新的潜在生物标志物来预测预后和免疫治疗反应,以期改善这一情况。从癌症基因组图谱中获取了 CC 病例的转录组数据、MAF 文件和临床信息,并利用 Pearson 相关分析鉴定 CRLs。共纳入 304 例符合条件的 CC 患者,随机分为训练组和测试组。基于铜死亡相关 lncRNAs 构建宫颈癌预后标志物,采用 LASSO 回归和多因素 Cox 回归。随后,我们生成 Kaplan-Meier 曲线、受试者工作特征曲线和列线图来验证预测 CC 患者预后的能力。还通过功能富集分析评估了评估风险亚组之间差异表达的基因。分析免疫细胞浸润和肿瘤突变负担,以探讨该标志物的潜在机制。此外,还检测了预后标志物预测免疫治疗反应和化疗药物敏感性的潜在价值。在本研究中,构建了一个包含 8 个铜死亡相关 lncRNAs(AL441992.1、SOX21-AS1、AC011468.3、AC012306.2、FZD4-DT、AP001922.5、RUSC1-AS1、AP001453.2)的风险模型,用于预测 CC 患者的生存结局,并对风险模型的可靠性进行了评估。Cox 回归分析表明,综合风险评分是一个独立的预后因素。此外,在无进展生存期、免疫细胞浸润、免疫检查点抑制剂治疗反应以及化疗药物 IC50 方面,风险亚组之间存在显著差异,提示我们的模型可用于评估免疫治疗和化疗的临床疗效。基于我们的 8-CRLs 风险模型,我们能够独立评估 CC 患者的预后和免疫治疗反应,该模型可能有益于个体化治疗的临床决策。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e86/10318051/c4aa57f175f5/41598_2023_37898_Fig1_HTML.jpg

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