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受自然启发的酶工程与可持续催化:来自植物和极端微生物世界的生化线索

Nature-inspired Enzyme engineering and sustainable catalysis: biochemical clues from the world of plants and extremophiles.

作者信息

Chatterjee Anwesha, Puri Sonakshi, Sharma Pankaj Kumar, Deepa P R, Chowdhury Shibasish

机构信息

Department of Biological Sciences, Birla Institute of Technology and Science (BITS), Pilani, India.

出版信息

Front Bioeng Biotechnol. 2023 Jun 20;11:1229300. doi: 10.3389/fbioe.2023.1229300. eCollection 2023.

Abstract

The use of enzymes to accelerate chemical reactions for the synthesis of industrially important products is rapidly gaining popularity. Biocatalysis is an environment-friendly approach as it not only uses non-toxic, biodegradable, and renewable raw materials but also helps to reduce waste generation. In this context, enzymes from organisms living in extreme conditions (extremozymes) have been studied extensively and used in industries (food and pharmaceutical), agriculture, and molecular biology, as they are adapted to catalyze reactions withstanding harsh environmental conditions. Enzyme engineering plays a key role in integrating the structure-function insights from reference enzymes and their utilization for developing improvised catalysts. It helps to transform the enzymes to enhance their activity, stability, substrates-specificity, and substrate-versatility by suitably modifying enzyme structure, thereby creating new variants of the enzyme with improved physical and chemical properties. Here, we have illustrated the relatively less-tapped potentials of plant enzymes in general and their sub-class of extremozymes for industrial applications. Plants are exposed to a wide range of abiotic and biotic stresses due to their sessile nature, for which they have developed various mechanisms, including the production of stress-response enzymes. While extremozymes from microorganisms have been extensively studied, there are clear indications that plants and algae also produce extremophilic enzymes as their survival strategy, which may find industrial applications. Typical plant enzymes, such as ascorbate peroxidase, papain, carbonic anhydrase, glycoside hydrolases and others have been examined in this review with respect to their stress-tolerant features and further improvement via enzyme engineering. Some rare instances of plant-derived enzymes that point to greater exploration for industrial use have also been presented here. The overall implication is to utilize biochemical clues from the plant-based enzymes for robust, efficient, and substrate/reaction conditions-versatile scaffolds or reference leads for enzyme engineering.

摘要

利用酶来加速化学反应以合成具有重要工业价值的产品正迅速受到欢迎。生物催化是一种环境友好型方法,因为它不仅使用无毒、可生物降解和可再生的原材料,还有助于减少废物产生。在这种背景下,来自极端环境生物的酶(极端酶)已得到广泛研究,并应用于工业(食品和制药)、农业及分子生物学领域,因为它们能够适应在恶劣环境条件下催化反应。酶工程在整合参考酶的结构 - 功能见解及其用于开发改良催化剂方面发挥着关键作用。它有助于通过适当修饰酶的结构来改造酶,以提高其活性、稳定性、底物特异性和底物通用性,从而创造出具有改善的物理和化学性质的新酶变体。在此,我们阐述了一般植物酶及其极端酶子类在工业应用中尚未充分挖掘的潜力。由于植物具有固着生长的特性,它们会面临各种非生物和生物胁迫,为此它们进化出了多种机制,包括产生应激反应酶。虽然来自微生物的极端酶已得到广泛研究,但有明确迹象表明植物和藻类也会产生极端嗜热酶作为其生存策略,这些酶可能具有工业应用价值。在本综述中,我们研究了典型的植物酶,如抗坏血酸过氧化物酶、木瓜蛋白酶、碳酸酐酶、糖苷水解酶等,探讨了它们的耐胁迫特性以及通过酶工程进一步改进的方法。本文还介绍了一些植物源酶的罕见实例,这些实例表明其在工业用途方面有更大的探索空间。总体而言,目的是利用植物基酶的生化线索,为酶工程构建强大、高效且具有底物/反应条件通用性的支架或参考先导物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/76a6/10318364/7758d07be9ef/fbioe-11-1229300-g001.jpg

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