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湖泊噬甲基菌,一种新型红杆菌科成员,分离自内陆高山湖泊。

Parerythrobacter lacustris sp. nov., a novel member of the family Erythrobacteraceae isolated from an inland alpine lake.

机构信息

College of Life Sciences, Zhejiang University, Hangzhou, 310058, People's Republic of China.

College of Life Sciences and Medicine, Zhejiang Sci-Tech University, Hangzhou, 310018, People's Republic of China.

出版信息

Arch Microbiol. 2023 Jul 7;205(8):279. doi: 10.1007/s00203-023-03616-7.

Abstract

A novel bacterium, designated as strain RS5-5, was isolated from lake water in northwestern China. Cells of the isolate were observed to be rod shaped and Gram stain negative. Its growth occurred at 4-37 ℃, pH 6.5-9.0 and in the presence of 0-5% (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain RS5-5 was most closely related to Qipengyuania sediminis GDMCC 1.2497 (97.5%), followed by Erythrobacter dokdonensis DSW-74 (97.3%) and Qipengyuania algicida GDMCC 1.2535 (97.0%). Phylogenomic analysis revealed that strain RS5-5 formed a distinct branch with the genus Parerythrobacter. The sole quinone was ubiquinone-10, and the major fatty acids (≥ 10%) were unsaturated fatty acids including C ω6c, summed feature 3 (C ω7c/C ω6c) and summed feature 8 (C ω7c/C ω6c). The polar lipids were phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylcholine, one unidentified sphingoglycolipid, three unidentified glycolipids, one unidentified aminoglycolipid, one unidentified aminolipid, two unidentified phospholipids and four unidentified polar lipids. Chemotaxonomic characteristics of strain RS5-5 were coincident with those of the genus Parerythrobacter members. The average nucleotide identity, average amino acid identity and digital DNA-DNA hybridization values between strain RS5-5 and two Parerythrobacter reference strains were in the ranges of 73.2-77.7%, 69.0-78.0% and 18.9-20.4%, respectively. The genomic DNA G + C content of strain RS5-5 was 64.1%. The results of phenotypic, phylogenetic and genomic analyses suggested that strain RS5-5 represents a novel species in the genus Parerythrobacter, for which the name Parerythrobacter lacustris sp. nov. is proposed. The type strain is RS5-5 (= GDMCC 1.3163 = KCTC 92277).

摘要

一株新的细菌,被命名为 RS5-5 菌株,从中国西北部的湖水分离得到。观察到分离株的细胞呈杆状,革兰氏染色阴性。它的生长温度为 4-37℃,pH 值为 6.5-9.0,在 0-5%(w/v)NaCl 的存在下生长。基于 16S rRNA 基因序列的系统发育分析表明,RS5-5 菌株与 Qipengyuania sediminis GDMCC 1.2497(97.5%)最为密切相关,其次是 Erythrobacter dokdonensis DSW-74(97.3%)和 Qipengyuania algicida GDMCC 1.2535(97.0%)。系统基因组分析表明,RS5-5 菌株与 Parerythrobacter 属形成了一个独特的分支。唯一的醌是泛醌-10,主要脂肪酸(≥10%)为不饱和脂肪酸,包括 C ω6c、总和特征 3(C ω7c/C ω6c)和总和特征 8(C ω7c/C ω6c)。极性脂包括磷脂酰乙醇胺、双磷脂酰甘油、磷脂酰甘油、磷脂酰胆碱、一种未鉴定的神经酰胺糖脂、三种未鉴定的糖脂、一种未鉴定的氨基糖脂、一种未鉴定的氨基脂、两种未鉴定的磷脂和四种未鉴定的极性脂。RS5-5 菌株的化学生物分类特征与 Parerythrobacter 属成员一致。RS5-5 菌株与两个 Parerythrobacter 参考菌株的平均核苷酸同一性、平均氨基酸同一性和数字 DNA-DNA 杂交值分别在 73.2-77.7%、69.0-78.0%和 18.9-20.4%之间。RS5-5 菌株的基因组 DNA G+C 含量为 64.1%。表型、系统发育和基因组分析的结果表明,RS5-5 菌株代表 Parerythrobacter 属的一个新种,建议将其命名为 Parerythrobacter lacustris sp. nov.。其模式菌株为 RS5-5(=GDMCC 1.3163=KCTC 92277)。

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