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基于麦加省一些山区位点的SSR标记推断的(L.)C. Chr的群体遗传学、遗传结构和近亲繁殖

Population Genetics, Genetic Structure, and Inbreeding of (L.) C. Chr Inferred from SSR Markers in Some Mountainous Sites of Makkah Province.

作者信息

Mansour Hassan, Alamer Khalid H, Al-Hasawi Zaki M

机构信息

Biological Sciences Department, Faculty of Science and Arts, King Abdulaziz University, Rabigh 21911, Saudi Arabia.

Department of Botany and Microbiology, Faculty of Science, Suez Canal University, Ismailia 41522, Egypt.

出版信息

Plants (Basel). 2023 Jun 30;12(13):2506. doi: 10.3390/plants12132506.

Abstract

(L.) C. Chr is a perennial plant existing mainly in the southern and western mountains of the Arabian Peninsula. In the Makkah province, the remaining populations are threatened by many factors such as overcutting, overgrazing, and urban developments. These dangers are expected to be aggravated by the progression of aridification factors arising from climate change. To overcome the decline in remaining populations of this valuable species, a timely evaluation of the population's genetic variables and genetic structure is vital for the conservation of existing populations. In this study, we used 61 SSR primers to achieve this objective. Only 50 loci showed polymorphisms, which led to further analysis of the population genetics for 600 genotypes that were collected from 50 populations of found in 10 different sites in the Makkah region: Gebel Al Muliesaa, Wadi Albathna, Wadi Houra, Wadi Albaidaa, Wadi Elebiedia, Gebel Kniethl, Wadi Sayaa, Wadi Elbarasa, Wadi Alfawara, and Wadi Alkharar. The results showed an obvious decrease in genetic diversity variables in all studied populations. The range of was between 8 and 40; additionally, the low value of 0.804 and the high value of inbreeding, = 0.238, reflected a severe lack of heterozygotes. High levels of F and G and low gene flow indicate considerable segregation among the populations, which creates a barrier to gene migration. Our data suggest the need for conservation planning for in order to avoid the species' forthcoming extinction. Efforts should be largely oriented around managing water consumption, prohibiting overcutting and overgrazing, and establishing appropriate seed banks.

摘要

(L.) C. Chr是一种多年生植物,主要存在于阿拉伯半岛的南部和西部山区。在麦加省,其剩余种群受到诸多因素的威胁,如过度砍伐、过度放牧和城市发展。预计气候变化导致的干旱化因素加剧,这些危险将进一步恶化。为克服这一珍贵物种剩余种群数量的下降,及时评估种群的遗传变量和遗传结构对于保护现有种群至关重要。在本研究中,我们使用61对SSR引物来实现这一目标。只有50个位点显示出多态性,这使得我们能够对从麦加地区10个不同地点的50个种群中收集的600个基因型进行种群遗传学的进一步分析,这些地点包括:盖贝尔·穆利埃萨山、瓦迪·阿尔巴特纳、瓦迪·胡拉、瓦迪·阿尔拜达、瓦迪·埃莱比迪亚、盖贝尔·克尼思尔、瓦迪·赛亚、瓦迪·埃尔巴拉萨、瓦迪·阿尔法瓦拉和瓦迪·阿尔哈拉尔。结果表明,所有研究种群的遗传多样性变量均明显下降。等位基因数范围在8至40之间;此外,低的观测杂合度值0.804和高的近交系数值F = 0.238反映出杂合子严重缺乏。高的F和G值以及低的基因流表明种群间存在相当程度的隔离,这为基因迁移造成了障碍。我们的数据表明需要对(L.) C. Chr进行保护规划,以避免该物种即将面临的灭绝。应主要围绕管理用水、禁止过度砍伐和过度放牧以及建立合适的种子库等方面做出努力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4c36/10346734/4c60f084d541/plants-12-02506-g001.jpg

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