Department of Orthopedics, Third Affiliated Hospital of Naval Medical University, Shanghai, China.
Department of Orthopedics, The Second Affiliated Hospital of Soochow University, Suzhou, Jiangsu, China.
Front Immunol. 2023 Jul 3;14:1202725. doi: 10.3389/fimmu.2023.1202725. eCollection 2023.
As the most abundant infiltrating immune cells in the tumor microenvironment (TME), tumor-associated macrophages (TAMs) are pivotal in tumor development and treatment. The present investigation endeavors to explore the potential of M1 macrophage-related genes (MRGs) as biomarkers for assessing risk in individuals with osteosarcoma. RNA-sequence data and clinical data were derived from TCGA and GEO databases. The CIBERSORT method was utilized to discern subtypes of tumor-infiltrating immune cells. Identification of MRGs was achieved through Pearson correlation analysis. A prognostic risk model for MRGs was developed using Cox and LASSO regression analyses. A tripartite gene signature comprising CD37, GABRD, and ARHGAP25 was an independent prognostic indicator and was employed to develop a risk score model. The internal and external validation cohort confirmed the results. The area under the ROC curve (AUC) was determined for survival periods of 1 year, three years, and five years, yielding values of 0.746, 0.839, and 0.850, respectively. The C-index of the risk score was found to be superior to clinicopathological factors. GO/KEGG enrichment showed that the differences between high- and low-risk groups were predominantly associated with immune response pathways. Immune-related analysis related to proportions of immune cells, immune function, and expression levels of immune checkpoint genes all showed differences between the high- and low-risk groups. The qRT-PCR and Western blotting results indicate that CD37 expression was markedly higher in MG63 and U2OS cell lines when compared to normal osteoblast hFOB1.19. In U2OS cell line, GABRD expression levels were significantly upregulated. ARHGAP25 expression levels were elevated in both 143B and U2OS cell lines. In summary, utilizing a macrophage genes signature demonstrates efficacy in predicting both the prognosis and therapy response of OS. Additionally, immune analysis confirms a correlation between the risk score and the tumor microenvironment. Our findings, therefore, provide a cogent account for the disparate prognoses observed among patients and furnish a justification for further inquiry into biomarkers and anti-tumor treatment strategies.
作为肿瘤微环境(TME)中最丰富的浸润免疫细胞,肿瘤相关巨噬细胞(TAMs)在肿瘤的发生和治疗中起着关键作用。本研究旨在探讨 M1 巨噬细胞相关基因(MRGs)作为评估骨肉瘤患者风险的生物标志物的潜力。从 TCGA 和 GEO 数据库中提取 RNA-seq 数据和临床数据。利用 CIBERSORT 方法区分肿瘤浸润免疫细胞的亚型。通过 Pearson 相关分析鉴定 MRGs。使用 Cox 和 LASSO 回归分析建立 MRGs 的预后风险模型。由 CD37、GABRD 和 ARHGAP25 组成的三基因特征是独立的预后指标,并用于构建风险评分模型。内部和外部验证队列验证了结果。确定了 1 年、3 年和 5 年的生存时间的 ROC 曲线下面积(AUC),分别为 0.746、0.839 和 0.850。风险评分的 C 指数优于临床病理因素。GO/KEGG 富集表明,高低风险组之间的差异主要与免疫反应途径有关。免疫相关分析与免疫细胞比例、免疫功能和免疫检查点基因表达水平的差异均显示高低风险组之间存在差异。qRT-PCR 和 Western blot 结果表明,与正常成骨细胞 hFOB1.19 相比,CD37 在 MG63 和 U2OS 细胞系中的表达明显更高。在 U2OS 细胞系中,GABRD 表达水平显著上调。在 143B 和 U2OS 细胞系中,ARHGAP25 的表达水平均升高。总之,利用巨噬细胞基因特征可有效预测 OS 的预后和治疗反应。此外,免疫分析证实风险评分与肿瘤微环境之间存在相关性。因此,我们的研究结果为患者之间观察到的不同预后提供了合理的解释,并为进一步研究生物标志物和抗肿瘤治疗策略提供了依据。