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产细菌素质粒CloDF13的完整核苷酸序列

The complete nucleotide sequence of the bacteriocinogenic plasmid CloDF13.

作者信息

Nijkamp H J, de Lang R, Stuitje A R, van den Elzen P J, Veltkamp E, van Putten A J

出版信息

Plasmid. 1986 Sep;16(2):135-60. doi: 10.1016/0147-619x(86)90072-7.

DOI:10.1016/0147-619x(86)90072-7
PMID:3749334
Abstract

The complete nucleotide sequence of the bacteriocinogenic plasmid CloDF13 has been determined. The plasmid consists of 9957 base pairs (molecular weight 6.64 X 10(6] with a GC content of 54.4%. At this moment 16 identified biological functions can be assigned to the primary structure of the CloDF13 DNA. The functions include those of eight protein encoding genes, two untranslated RNA species, and six DNA sites. We discuss these functions in relation to the structure of CloDF13 DNA. For convenience we have divided the CloDF13 genome into five defined regions: region I (origin of vegetative replication, priming and control of replication, type I incompatibility), region II (cloacin DF13, cloacin immunity, cloacin release, cloacin operon control), region III (double-stranded DNA-phage interaction, type II incompatibility, multimer resolution), region IV (inhibition of male specific RNA phages and transfer of Flac), and region V (mobility proteins, basis of mobility).

摘要

致育因子质粒CloDF13的完整核苷酸序列已被测定。该质粒由9957个碱基对组成(分子量为6.64×10⁶),GC含量为54.4%。目前,CloDF13 DNA的一级结构可赋予16种已确定的生物学功能。这些功能包括8个蛋白质编码基因、2种非翻译RNA种类以及6个DNA位点的功能。我们结合CloDF13 DNA的结构来讨论这些功能。为方便起见,我们将CloDF13基因组划分为五个明确的区域:区域I(营养复制起点、复制引发与控制、I型不相容性),区域II(杀梭菌素DF13、杀梭菌素免疫、杀梭菌素释放、杀梭菌素操纵子控制),区域III(双链DNA噬菌体相互作用、II型不相容性、多聚体解析),区域IV(抑制雄性特异性RNA噬菌体和Flac转移),以及区域V(迁移蛋白、迁移基础)。

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1
The complete nucleotide sequence of the bacteriocinogenic plasmid CloDF13.产细菌素质粒CloDF13的完整核苷酸序列
Plasmid. 1986 Sep;16(2):135-60. doi: 10.1016/0147-619x(86)90072-7.
2
Transcription of bacteriocinogenic plasmid CloDF13 in vivo and in vitro: structure of the cloacin immunity operon.产细菌素质粒CloDF13在体内和体外的转录:杀梭菌素免疫操纵子的结构
J Bacteriol. 1980 Nov;144(2):579-91. doi: 10.1128/jb.144.2.579-591.1980.
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Replication and gene functions of the bacteriocinogenic plasmid CloDF13.产细菌素质粒CloDF13的复制及基因功能
Contrib Microbiol Immunol. 1979;6:111-21.
4
Structure and nucleotide sequence of the region encoding the mobilization proteins of plasmid CloDF13.编码质粒CloDF13迁移蛋白区域的结构与核苷酸序列
Gene. 1987;51(2-3):171-8. doi: 10.1016/0378-1119(87)90305-2.
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Protein H encoded by plasmid CloDF13 is involved in excretion of cloacin DF13.质粒CloDF13编码的蛋白质H参与了绿脓菌素DF13的分泌。
J Bacteriol. 1982 Jun;150(3):1115-21. doi: 10.1128/jb.150.3.1115-1121.1982.
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Molecular structure and function of the bacteriocin gene and bacteriocin protein of plasmid Clo DF13.质粒Clo DF13的细菌素基因及细菌素蛋白的分子结构与功能
Nucleic Acids Res. 1983 Apr 25;11(8):2465-77. doi: 10.1093/nar/11.8.2465.
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Molecular structure of the immunity gene and immunity protein of the bacteriocinogenic plasmid Clo DF13.产细菌素质粒Clo DF13免疫基因及免疫蛋白的分子结构
Nucleic Acids Res. 1980 Oct 10;8(19):4349-63. doi: 10.1093/nar/8.19.4349.
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The nucleotide sequence surrounding the replication origin of the cop3 mutant of the bacteriocinogenic plasmid Clo DF13.产细菌素质粒Clo DF13的cop3突变体复制起点周围的核苷酸序列。
Nucleic Acids Res. 1980 Apr 11;8(7):1459-73. doi: 10.1093/nar/8.7.1459.
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Structure and regulation of gene expression of a Clo DF13 plasmid DNA region involved in plasmid segregation and incompatibility.参与质粒分离和不相容性的Clo DF13质粒DNA区域的基因表达结构与调控
Nucleic Acids Res. 1983 Dec 20;11(24):8791-808. doi: 10.1093/nar/11.24.8791.
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Molecular structure and immunity specificity of colicin E6, an evolutionary intermediate between E-group colicins and cloacin DF13.大肠杆菌素E6的分子结构与免疫特异性,E族大肠杆菌素与绿脓杆菌素DF13之间的进化中间体
J Bacteriol. 1989 Dec;171(12):6430-6. doi: 10.1128/jb.171.12.6430-6436.1989.

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