Guo Hao, Wu Yuye, Li Lirong, Wang Jianfeng, Xu Juan, He Fang
Laboratory Medicine Center, Department of Clinical Laboratory, Zhejiang Provincial People's Hospital, Affiliated People's Hospital, Hangzhou Medical College, Hangzhou, Zhejiang 310014, China.
Department of Clinical Laboratory, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang 310016, China.
Comput Struct Biotechnol J. 2023 Jul 13;21:3557-3563. doi: 10.1016/j.csbj.2023.07.013. eCollection 2023.
The emergence of carbapenem-resistant (CRKP) co-carrying multiple carbapenemases is complicating clinical treatment. This study aimed to investigate the global dissemination trends of CRKP strains that co-carry multiple carbapenemases. The CRKP isolate KP424 co-carrying and , recovered from a stool specimen, was identified by the NG-Test Carba 5 test, and the genome sequence was further determined by using Nanopore MinION and Illumina NovaSeq 6000 technologies. The genome sequences of the CRKP strains carrying multiple carbapenemase genes were further retrieved from the NCBI GenBank database. Thirteen antimicrobial resistance genes, including and , have been identified in KP424, with and located on different plasmids. In total, 832 genome sequences of CRKP strains co-carrying two carbapenemase genes were retrieved from the NCBI database. Strains carrying both and accounted for 665 (79.9 %) of the total strains, ranking first, and those carrying both and accounted for 103 (12.4 %), ranking second. The prevalence of CRKP strains co-carrying two carbapenemase genes increased significantly over time, from 0.40 % in 2010 to 9.67 % in 2021. The proportion of strains carrying both and has also increased, from 0.00 % in 2010 to 4.40 % in 2021. The strains carrying both and had the highest prevalence (66.7 %, 52/78) in China, while those carrying both and had the highest prevalence worldwide. Multiple-carbapenemase producers pose a great threat to public health; further research on the mechanisms underlying multiple carbapenemase gene occurrence is required to prevent their global dissemination.
携带多种碳青霉烯酶的耐碳青霉烯肺炎克雷伯菌(CRKP)的出现使临床治疗变得复杂。本研究旨在调查携带多种碳青霉烯酶的CRKP菌株的全球传播趋势。从粪便标本中分离出的携带 和 的CRKP分离株KP424,通过NG-Test Carba 5试验进行鉴定,并使用Nanopore MinION和Illumina NovaSeq 6000技术进一步确定基因组序列。从NCBI GenBank数据库中进一步检索携带多个碳青霉烯酶基因的CRKP菌株的基因组序列。在KP424中已鉴定出13个抗菌抗性基因,包括 和 ,其中 和 位于不同的质粒上。总共从NCBI数据库中检索到832个携带两个碳青霉烯酶基因的CRKP菌株的基因组序列。同时携带 和 的菌株占总菌株的665株(79.9%),排名第一,同时携带 和 的菌株占103株(12.4%),排名第二。携带两个碳青霉烯酶基因的CRKP菌株的流行率随时间显著增加,从2010年的0.40%增至2021年的9.67%。同时携带 和 的菌株比例也有所增加,从2010年的0.00%增至2021年的4.40%。在中国,同时携带 和 的菌株流行率最高(66.7%,52/78),而在全球范围内,同时携带 和 的菌株流行率最高。多种碳青霉烯酶产生菌对公众健康构成巨大威胁;需要进一步研究多种碳青霉烯酶基因出现的潜在机制,以防止其在全球传播。