从发酵蔬菜中分离出的PN39MY的基因组序列数据集草案。
Draft genome sequence dataset of PN39MY isolated from fermented vegetables.
作者信息
Daliri Eric Banan-Mwine, Balnionytė Toma, Lastauskienė Eglė, Burokas Aurelijus
机构信息
Department of Biological Models, Institute of Biochemistry, Life Sciences Center, Vilnius University, Sauletekio Ave. 7, LT, Vilnius 10257, Lithuania.
Department of Microbiology and Biotechnology, Institute of Biosciences, Life Sciences Center, Vilnius University, Sauletekio Ave. 7, LT, Vilnius 10257, Lithuania.
出版信息
Data Brief. 2023 Jul 20;49:109436. doi: 10.1016/j.dib.2023.109436. eCollection 2023 Aug.
Here we report the draft genome sequence of the PN39MY strain. The strain was isolated from Lithuanian traditionally (homemade) fermented cucumber. The genome consisted of 83 contigs with a total size of 1,899,018 bp, an N50 of 40562 and a GC% of 42.1. After sequence trimming, 83 contigs were annotated and 1910 genes were coding sequences. The average nucleotide identity (ANI) between PN39MY and _ZJUNIT8 was 99.45% identifying the strain as . No genes related to antimicrobial resistance or virulence factors were found. The data presented here can be used in comparative genomics to identify antimicrobial resistant genes, plasmids and/or virulence factors that may be present in related species. The draft genome sequence data was deposited at NCBI under Bioproject with the accession number PRJNA941180.
在此，我们报告PN39MY菌株的基因组序列草图。该菌株从立陶宛传统（自制）发酵黄瓜中分离得到。基因组由83个重叠群组成，总大小为1,899,018 bp，N50为40562，GC含量为42.1%。序列修剪后，对83个重叠群进行了注释，其中1910个基因为编码序列。PN39MY与_ZJUNIT8之间的平均核苷酸同一性（ANI）为99.45%，据此将该菌株鉴定为 。未发现与抗微生物耐药性或毒力因子相关的基因。此处提供的数据可用于比较基因组学，以鉴定相关物种中可能存在的抗微生物耐药基因、质粒和/或毒力因子。基因组序列草图数据已存入NCBI的生物项目，登录号为PRJNA941180。
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