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中的PEBP基因家族的全基因组鉴定、系统发育及表达分析

Genome-wide identification, phylogeny, and expression analysis of PEBP gene family in .

作者信息

Tian Yujuan, Wang Jinxin, Wang Xiangyu, Wang Dongsheng, Wang Xuan, Liu Jing, Zhang Haie, Zhang Jingzheng, Yu Liyang

机构信息

Engineering Research Center of Chestnut Industry Technology, Ministry of Education, Hebei Normal University of Science and Technology, Qinhuangdao, Hebei, China.

Shijiazhuang Institute of Pomology, Hebei Academy of Agriculture and Forestry Sciences, Shijiazhuang, Hebei, China.

出版信息

Front Genet. 2025 Mar 26;16:1530910. doi: 10.3389/fgene.2025.1530910. eCollection 2025.

Abstract

The phosphatidylethanolamine binding protein (PEBP) family plays an important part in growth and development of plants. is an economic plant with significant financial value and has become an important food source in the Northern Hemisphere. However, the genes in have not been studied yet. In this study, six genes ( ∼ ) were identified in and comprehensively analyzed in terms of physicochemical properties, phylogeny, gene structures, -regulatory elements (), transcription factor interaction, and expression profiles. The six genes were categorized into three subfamilies according to the phylogeny analysis, and all of them share extremely similar gene and protein structures. A total of 136 were identified in the promoter regions of the genes, mainly related to growth and development, environmental stress, hormone response, and light response. Comparative genomic analysis indicated that the expansion of the genes was mainly driven by dispersed duplication, and the / derived from eudicot common hexaploidization (ECH) events retained orthologous genes in all species studied. A total of 259 transcription factors (TFs) belonging to 39 families were predicted to be regulators of genes, and was predicted to interact with the most TFs. The RNA-seq data analysis indicated the potential roles of genes in the ovule, bud, and flower development of , as well as in the response to temperature stress, drought stress, and the gall wasp (GWDK) infestation. Additionally, the expression of genes in seed kernel development and their response to temperature stress were confirmed by RT-qPCR assays. This study gives references and directions for future in-depth studies of genes.

摘要

磷脂酰乙醇胺结合蛋白(PEBP)家族在植物的生长发育中起着重要作用。[植物名称]是一种具有重要经济价值的作物,已成为北半球重要的食物来源。然而,[植物名称]中的[PEBP]基因尚未得到研究。在本研究中,在[植物名称]中鉴定出六个[PEBP]基因([基因名称1]~[基因名称6]),并从理化性质、系统发育、基因结构、顺式作用元件(cis-acting elements,CAEs)、转录因子相互作用和表达谱等方面进行了综合分析。根据系统发育分析,这六个[PEBP]基因被分为三个亚家族,它们的基因和蛋白质结构都极为相似。在[PEBP]基因的启动子区域共鉴定出136个CAEs,主要与生长发育、环境胁迫、激素反应和光反应有关。比较基因组分析表明,[PEBP]基因的扩增主要由分散重复驱动,并且源自真双子叶植物共同六倍体化(ECH)事件的[PEBP]基因在所有研究物种中都保留了直系同源基因。预测共有属于39个家族的259个转录因子(TFs)是[PEBP]基因的调控因子,并且预测[基因名称3]与最多的TFs相互作用。RNA-seq数据分析表明,[PEBP]基因在[植物名称]的胚珠、芽和花发育中以及对温度胁迫、干旱胁迫和瘿蜂(GWDK)侵染的响应中具有潜在作用。此外,通过RT-qPCR分析证实了[PEBP]基因在[植物名称]种子发育中的表达及其对温度胁迫的响应。本研究为今后深入研究[PEBP]基因提供了参考和方向。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2040/11979240/b59527548230/fgene-16-1530910-g001.jpg

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