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本文引用的文献

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Fine-tuning large neural language models for biomedical natural language processing.针对生物医学自然语言处理对大型神经语言模型进行微调。
Patterns (N Y). 2023 Apr 14;4(4):100729. doi: 10.1016/j.patter.2023.100729.
2
COVID-Twitter-BERT: A natural language processing model to analyse COVID-19 content on Twitter.COVID-Twitter-BERT:一种用于分析推特上新冠疫情相关内容的自然语言处理模型。
Front Artif Intell. 2023 Mar 14;6:1023281. doi: 10.3389/frai.2023.1023281. eCollection 2023.
3
Classifying the lifestyle status for Alzheimer's disease from clinical notes using deep learning with weak supervision.使用基于弱监督的深度学习对临床笔记进行阿尔茨海默病生活方式状况分类。
BMC Med Inform Decis Mak. 2022 Jul 7;22(Suppl 1):88. doi: 10.1186/s12911-022-01819-4.
4
AMMU: A survey of transformer-based biomedical pretrained language models.基于变压器的生物医学预训练语言模型综述。
J Biomed Inform. 2022 Feb;126:103982. doi: 10.1016/j.jbi.2021.103982. Epub 2021 Dec 31.
5
LSTM and GRU Neural Networks as Models of Dynamical Processes Used in Predictive Control: A Comparison of Models Developed for Two Chemical Reactors.长短期记忆神经网络和门控循环单元神经网络作为预测控制中动态过程的模型:为两个化学反应器开发的模型的比较。
Sensors (Basel). 2021 Aug 20;21(16):5625. doi: 10.3390/s21165625.
6
Indian citizen's perspective about side effects of COVID-19 vaccine - A machine learning study.印度公民对 COVID-19 疫苗副作用的看法——一项机器学习研究。
Diabetes Metab Syndr. 2021 Jul-Aug;15(4):102172. doi: 10.1016/j.dsx.2021.06.009. Epub 2021 Jun 10.
7
Med-BERT: pretrained contextualized embeddings on large-scale structured electronic health records for disease prediction.医学BERT:基于大规模结构化电子健康记录进行疾病预测的预训练上下文嵌入模型
NPJ Digit Med. 2021 May 20;4(1):86. doi: 10.1038/s41746-021-00455-y.
8
Biomedical named entity recognition using BERT in the machine reading comprehension framework.基于机器阅读理解框架的 BERT 在生物医学命名实体识别中的应用。
J Biomed Inform. 2021 Jun;118:103799. doi: 10.1016/j.jbi.2021.103799. Epub 2021 May 6.
9
Applying Machine Learning to Identify Anti-Vaccination Tweets during the COVID-19 Pandemic.应用机器学习识别 COVID-19 大流行期间的反疫苗推文。
Int J Environ Res Public Health. 2021 Apr 12;18(8):4069. doi: 10.3390/ijerph18084069.
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Tweet Topics and Sentiments Relating to COVID-19 Vaccination Among Australian Twitter Users: Machine Learning Analysis.澳大利亚推特用户与 COVID-19 疫苗接种相关的推文主题和情绪:机器学习分析。
J Med Internet Res. 2021 May 19;23(5):e26953. doi: 10.2196/26953.

关于用于新冠病毒研究的自然语言处理模型的综述。

A review on Natural Language Processing Models for COVID-19 research.

作者信息

Hall Karl, Chang Victor, Jayne Chrisina

机构信息

SCEDT, Teesside University, UK.

Operations Information Management, ABS, Aston University, UK.

出版信息

Healthc Anal (N Y). 2022 Nov;2:100078. doi: 10.1016/j.health.2022.100078. Epub 2022 Jul 19.

DOI:10.1016/j.health.2022.100078
PMID:37520621
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9295335/
Abstract

This survey paper reviews Natural Language Processing Models and their use in COVID-19 research in two main areas. Firstly, a range of transformer-based biomedical pretrained language models are evaluated using the BLURB benchmark. Secondly, models used in sentiment analysis surrounding COVID-19 vaccination are evaluated. We filtered literature curated from various repositories such as PubMed and Scopus and reviewed 27 papers. When evaluated using the BLURB benchmark, the novel T-BPLM BioLinkBERT gives groundbreaking results by incorporating document link knowledge and hyperlinking into its pretraining. Sentiment analysis of COVID-19 vaccination through various Twitter API tools has shown the public's sentiment towards vaccination to be mostly positive. Finally, we outline some limitations and potential solutions to drive the research community to improve the models used for NLP tasks.

摘要

这篇综述论文回顾了自然语言处理模型及其在两个主要领域的新冠肺炎研究中的应用。首先,使用BLURB基准对一系列基于Transformer的生物医学预训练语言模型进行了评估。其次,对围绕新冠肺炎疫苗接种的情感分析中使用的模型进行了评估。我们筛选了从PubMed和Scopus等各种数据库中整理的文献,并审查了27篇论文。当使用BLURB基准进行评估时,新颖的T-BPLM BioLinkBERT通过将文档链接知识和超链接纳入其预训练中,给出了开创性的结果。通过各种Twitter API工具对新冠肺炎疫苗接种进行的情感分析表明,公众对疫苗接种的态度大多是积极的。最后,我们概述了一些局限性和潜在的解决方案,以推动研究界改进用于自然语言处理任务的模型。