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利用多模态方法鉴定候选途径和生物标志物,并预测英国生物银行个体的衰弱综合征。

Utilizing multimodal approach to identify candidate pathways and biomarkers and predicting frailty syndrome in individuals from UK Biobank.

机构信息

Institute of Clinical Medicine, National Yang Ming Chiao Tung University, Taipei, Taiwan.

Bioinformatics and Biostatistics Core, Centers of Genomic and Precision Medicine, National Taiwan University, Taipei, Taiwan.

出版信息

Geroscience. 2024 Feb;46(1):1211-1228. doi: 10.1007/s11357-023-00874-7. Epub 2023 Jul 31.

Abstract

Frailty, a prevalent clinical syndrome in aging adults, is characterized by poor health outcomes, represented via a standardized frailty-phenotype (FP), and Frailty Index (FI). While the relevance of the syndrome is gaining awareness, much remains unclear about its underlying biology. Further elucidation of the genetic determinants and possible underlying mechanisms may help improve patients' outcomes allowing healthy aging.Genotype, clinical and demographic data of subjects (aged 60-73 years) from UK Biobank were utilized. FP was defined on Fried's criteria. FI was calculated using electronic-health-records. Genome-wide-association-studies (GWAS) were conducted and polygenic-risk-scores (PRS) were calculated for both FP and FI. Functional analysis provided interpretations of underlying biology. Finally, machine-learning (ML) models were trained using clinical, demographic and PRS towards identifying frail from non-frail individuals.Thirty-one loci were significantly associated with FI accounting for 12% heritability. Seventeen of those were known associations for body-mass-index, coronary diseases, cholesterol-levels, and longevity, while the rest were novel. Significant genes CDKN2B and APOE, previously implicated in aging, were reported to be enriched in lipoprotein-particle-remodeling. Linkage-disequilibrium-regression identified specific regulation in limbic-system, associated with long-term memory and cognitive-function. XGboost was established as the best performing ML model with area-under-curve as 85%, sensitivity and specificity as 0.75 and 0.8, respectively.This study provides novel insights into increased vulnerability and risk stratification of frailty syndrome via a multi-modal approach. The findings suggest frailty as a highly polygenic-trait, enriched in cholesterol-remodeling and metabolism and to be genetically associated with cognitive abilities. ML models utilizing FP and FI + PRS were established that identified frailty-syndrome patients with high accuracy.

摘要

衰弱是一种普遍存在于老年人群中的临床综合征,其特征是健康状况不佳,表现在标准化的衰弱表型(FP)和衰弱指数(FI)上。尽管该综合征的相关性越来越受到关注,但对其潜在生物学机制仍有许多不清楚的地方。进一步阐明遗传决定因素和可能的潜在机制可能有助于改善患者的预后,实现健康老龄化。

本研究利用英国生物库中年龄在 60-73 岁的受试者的基因型、临床和人口统计学数据。FP 根据 Fried 的标准定义。FI 是通过电子健康记录计算的。进行了全基因组关联研究(GWAS),并计算了 FP 和 FI 的多基因风险评分(PRS)。功能分析提供了潜在生物学的解释。最后,使用临床、人口统计学和 PRS 训练机器学习(ML)模型,以识别虚弱个体和非虚弱个体。

与 FI 显著相关的有 31 个位点,占遗传率的 12%。其中 17 个是与体重指数、冠心病、胆固醇水平和长寿相关的已知关联,其余的是新发现的。先前与衰老有关的重要基因 CDKN2B 和 APOE 被报道在脂蛋白颗粒重塑中富集。连锁不平衡回归确定了与长期记忆和认知功能相关的边缘系统的特定调节。XGboost 被确定为性能最佳的 ML 模型,曲线下面积为 85%,敏感性和特异性分别为 0.75 和 0.8。

这项研究通过多模态方法为衰弱综合征的脆弱性增加和风险分层提供了新的见解。研究结果表明,衰弱是一种高度多基因特征,富含胆固醇重塑和代谢,与认知能力存在遗传关联。利用 FP 和 FI+PRS 建立了 ML 模型,能够准确识别衰弱综合征患者。

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