Shaanxi Key Laboratory of Natural Products & Chemical Biology, College of Chemistry & Pharmacy, Northwest A&F University, 3 Taicheng Road, Yangling, 712100, Shaanxi, China.
College of Biology Pharmacy & Food Engineering, Shangluo University, Shangluo, 726000, Shaanxi, China.
Biochem Genet. 2024 Apr;62(2):1087-1102. doi: 10.1007/s10528-023-10463-0. Epub 2023 Aug 2.
Actinomycetes are remarkable natural sources of active natural molecules and enzymes of considerable industrial value. Streptomyces mobaraensis is the first microorganism found to produce transglutaminase with broad industrial applications. Although transglutaminase in S. mobaraensis has been well studied over the past three decades, the genome of S. mobaraensis and its secondary metabolic potential were poorly reported. Here, we presented the complete genome of S. mobaraensis DSM40587 obtained from the German Collection of Microorganisms and Cell Cultures GmbH. It contains a linear chromosome of 7,633,041 bp and a circular plasmid of 23,857 bp. The chromosome with an average GC content of 73.49% was predicted to harbour 6683 protein-coding genes, seven rRNA and 69 tRNA genes. Comparative genomic analysis reveals its meaningful genomic characterisation. A comprehensive bioinformatics investigation identifies 35 putative BGCs (biosynthesis gene clusters) involved in synthesising various secondary metabolites. Of these, 13 clusters showed high similarity (> 55%) to known BGCs coding for polyketides, nonribosomal peptides, hopene, RiPP (Ribosomally synthesized and post-translationally modified peptides), and others. Furthermore, these BGCs with over 65% similarity to the known BGCs were analysed in detail. The complete genome of S. mobaraensis DSM40587 reveals its capacity to yield diverse bioactive natural products and provides additional insights into discovering novel secondary metabolites.
放线菌是具有重要工业价值的活性天然分子和酶的重要天然来源。藤仓链轮丝菌是第一种被发现具有广泛工业应用的转谷氨酰胺酶的微生物。尽管过去三十年来藤仓链轮丝菌中的转谷氨酰胺酶已得到很好的研究,但该菌的基因组及其次级代谢潜能的报道却很少。在此,我们介绍了从德国微生物保藏中心获得的藤仓链轮丝菌 DSM40587 的完整基因组。它包含一条 7633041bp 的线性染色体和一条 23857bp 的圆形质粒。平均 GC 含量为 73.49%的染色体预计包含 6683 个编码蛋白的基因、7 个 rRNA 和 69 个 tRNA 基因。比较基因组分析揭示了其有意义的基因组特征。全面的生物信息学研究确定了 35 个可能的 BGC(生物合成基因簇),这些 BGC 参与合成各种次级代谢产物。其中,13 个簇与已知的聚酮化合物、非核糖体肽、hopene、RiPP(核糖体合成和翻译后修饰的肽)和其他基因簇的相似性>55%。此外,还对与已知 BGC 相似度超过 65%的这些 BGC 进行了详细分析。藤仓链轮丝菌 DSM40587 的完整基因组揭示了其产生多种生物活性天然产物的能力,并为发现新型次级代谢产物提供了更多的见解。