Triki Houssem E M, Ribeyre Fabienne, Pinard Fabrice, Jaeger Marc
CIRAD, UMR AMAP, F-34398 Montpellier, France.
AMAP, University of Montpellier, CIRAD, CNRS, INRAE, IRD, Montpellier, France.
Plant Phenomics. 2023 Aug 4;5:0077. doi: 10.34133/plantphenomics.0077. eCollection 2023.
Coupling plant growth model with pests and diseases (P&D) models, with consideration for the long-term feedback that occurs after the interaction, is still a challenging task nowadays. While a number of studies have examined various methodologies, none of them provides a generic frame able to host existing models and their codes without updating deeply their architecture. We developed MIMIC (Mediation Interface for Model Inner Coupling), an open-access framework/tool for this objective. MIMIC allows to couple plant growth and P&D models in a variety of ways. Users can experiment with various interaction configurations, ranging from a weak coupling that is mediated by the direct exchange of inputs and outputs between models to an advanced coupling that utilizes a third-party tool if the models' data or operating cycles do not align. The users decide how the interactions operate, and the platform offers powerful tools to design key features of the interactions, mobilizing metaprogramming techniques. The proposed framework is demonstrated, implementing coffee berry borers' attacks on fruits. Observations conducted in a field in Sumatra (Indonesia) assess the coupled interaction model. Finally, we highlight the user-centric implementation characteristics of MIMIC, as a practical and convenient tool that requires minimal coding knowledge to use.
将植物生长模型与病虫害(P&D)模型相结合,并考虑到相互作用后产生的长期反馈,如今仍然是一项具有挑战性的任务。虽然许多研究已经考察了各种方法,但它们都没有提供一个通用框架,能够在不深度更新其架构的情况下容纳现有模型及其代码。我们为此目标开发了MIMIC(模型内部耦合的中介接口),一个开放获取的框架/工具。MIMIC允许以多种方式耦合植物生长模型和病虫害模型。用户可以试验各种相互作用配置,从通过模型之间直接交换输入和输出进行介导的弱耦合,到如果模型的数据或操作周期不一致则利用第三方工具的高级耦合。用户决定相互作用如何运行,并且该平台提供强大的工具来设计相互作用的关键特征,运用元编程技术。通过实施咖啡果小蠹对果实的攻击来演示所提出的框架。在印度尼西亚苏门答腊的一块田地中进行的观测评估了耦合相互作用模型。最后,我们强调了MIMIC以用户为中心的实现特征,它是一个实用且方便的工具,使用时所需的编码知识最少。