meiGAbiome, Microbiology Research Group, Servicio de Microbiología, Center for Advanced Scientific Research (CICA), Institute of Biomedical Research (INIBIC), University Hospital of A Coruña (HUAC), University of A Coruña (UDC), CIBER of Infectious Diseases (CIBERINFEC-ISCIII), Hospital Universitario, Spain.
Genomic and Health Department, FISABIO Foundation, Center for Advanced Research in Public Health, Valencia, Spain.
Mol Oncol. 2024 May;18(5):1143-1173. doi: 10.1002/1878-0261.13506. Epub 2023 Sep 13.
Oral and intestinal samples from a cohort of 93 colorectal cancer (CRC) patients and 30 healthy controls (non-CRC) were collected for microbiome analysis. Saliva (28 non-CRC and 94 CRC), feces (30 non-CRC and 97 CRC), subgingival fluid (20 CRC), and tumor tissue samples (20 CRC) were used for 16S metabarcoding and/or RNA sequencing (RNAseq) approaches. A differential analysis of the abundance, performed with the ANCOM-BC package, adjusting the P-values by the Holm-Bonferroni method, revealed that Parvimonas was significantly over-represented in feces from CRC patients (P-value < 0.001) compared to healthy controls. A total of 11 Parvimonas micra isolates were obtained from the oral cavity and adenocarcinoma of CRC patients. Genome analysis identified a pair of isolates from the same patient that shared 99.2% identity, demonstrating that P. micra can translocate from the subgingival cavity to the gut. The data suggest that P. micra could migrate in a synergistic consortium with other periodontal bacteria. Metatranscriptomics confirmed that oral bacteria were more active in tumor than in non-neoplastic tissues. We suggest that P. micra could be considered as a CRC biomarker detected in non-invasive samples such as feces.
从 93 名结直肠癌(CRC)患者和 30 名健康对照者(非 CRC)的队列中采集口腔和肠道样本进行微生物组分析。使用 16S 代谢组学和/或 RNA 测序(RNAseq)方法对唾液(28 名非 CRC 和 94 名 CRC)、粪便(30 名非 CRC 和 97 名 CRC)、龈下液(20 名 CRC)和肿瘤组织样本(20 名 CRC)进行分析。采用 ANCOM-BC 包进行丰度差异分析,通过 Holm-Bonferroni 方法调整 P 值,结果显示与健康对照组相比,CRC 患者粪便中的 Parvimonas 明显过度表达(P 值<0.001)。从 CRC 患者的口腔和腺癌中获得了总共 11 株 Parvimonas micra 分离株。基因组分析鉴定了来自同一患者的一对具有 99.2%同一性的分离株,表明 P. micra 可以从龈下腔转移到肠道。数据表明 P. micra 可以与其他牙周细菌协同迁移。宏转录组学证实口腔细菌在肿瘤组织中的活性高于非肿瘤组织。我们建议可以将 P. micra 视为可以在粪便等非侵入性样本中检测到的 CRC 生物标志物。