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全外显子组和转录组测序扩展了 Majewski 骨发育不良原基型 II 型的基因型。

Whole-Exome and Transcriptome Sequencing Expands the Genotype of Majewski Osteodysplastic Primordial Dwarfism Type II.

机构信息

Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies, IBIOM-CNR, 70126 Bari, Italy.

Department of Biosciences, University of Milan, 20133 Milan, Italy.

出版信息

Int J Mol Sci. 2023 Jul 31;24(15):12291. doi: 10.3390/ijms241512291.

DOI:10.3390/ijms241512291
PMID:37569667
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10418986/
Abstract

Microcephalic Osteodysplastic Primordial Dwarfism type II (MOPDII) represents the most common form of primordial dwarfism. MOPD clinical features include severe prenatal and postnatal growth retardation, postnatal severe microcephaly, hypotonia, and an increased risk for cerebrovascular disease and insulin resistance. Autosomal recessive biallelic loss-of-function genomic variants in the centrosomal pericentrin (PCNT) gene on chromosome 21q22 cause MOPDII. Over the past decade, exome sequencing (ES) and massive RNA sequencing have been effectively employed for both the discovery of novel disease genes and to expand the genotypes of well-known diseases. In this paper we report the results both the RNA sequencing and ES of three patients affected by MOPDII with the aim of exploring whether differentially expressed genes and previously uncharacterized gene variants, in addition to pathogenic variants, could be associated with the complex phenotype of this disease. We discovered a downregulation of key factors involved in growth, such as IGF1R, IGF2R, and RAF1, in all three investigated patients. Moreover, ES identified a shortlist of genes associated with deleterious, rare variants in MOPDII patients. Our results suggest that Next Generation Sequencing (NGS) technologies can be successfully applied for the molecular characterization of the complex genotypic background of MOPDII.

摘要

小头骨-骨生成不全性原发侏儒症 II 型(MOPDII)是最常见的原发侏儒症形式。MOPD 的临床特征包括严重的产前和产后生长迟缓、产后严重的小头畸形、低张力和增加脑血管疾病和胰岛素抵抗的风险。常染色体隐性双等位基因丧失功能的基因组变异在 21q22 号染色体上的中心体周质蛋白(PCNT)基因导致 MOPDII。在过去的十年中,外显子组测序(ES)和大规模 RNA 测序已被有效地用于发现新的疾病基因,并扩展已知疾病的基因型。在本文中,我们报告了 3 例 MOPDII 患者的 RNA 测序和 ES 的结果,目的是探讨除了致病性变异外,差异表达基因和以前未表征的基因变异是否与该疾病的复杂表型有关。我们发现所有 3 名患者的生长相关关键因子 IGF1R、IGF2R 和 RAF1 的表达下调。此外,ES 鉴定出一组与 MOPDII 患者有害、罕见变异相关的基因。我们的结果表明,下一代测序(NGS)技术可成功应用于 MOPDII 复杂基因型背景的分子特征分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16d1/10418986/5dc3c6a3d55f/ijms-24-12291-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16d1/10418986/32006a4bf7d7/ijms-24-12291-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16d1/10418986/5dc3c6a3d55f/ijms-24-12291-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16d1/10418986/32006a4bf7d7/ijms-24-12291-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/16d1/10418986/5dc3c6a3d55f/ijms-24-12291-g002.jpg

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