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利用近端遥感结合双链实时荧光定量PCR和机器学习检测小麦条锈病潜育期的最低发病限度

Detecting the Minimum Limit on Wheat Stripe Rust in the Latent Period Using Proximal Remote Sensing Coupled with Duplex Real-Time PCR and Machine Learning.

作者信息

Liu Qi, Sun Tingting, Wen Xiaojie, Zeng Minghao, Chen Jing

机构信息

Key Laboratory of the Pest Monitoring and Safety Control of Crops and Forests of the Xinjiang Uygur Autonomous Region, College of Agronomy, Xinjiang Agricultural University, Urumqi 830052, China.

Key Laboratory of Prevention and Control of Invasive Alien Species in Agriculture & Forestry of the North-Western Desert Oasis, Ministry of Agriculture and Rural Affairs, Urumqi 830052, China.

出版信息

Plants (Basel). 2023 Jul 29;12(15):2814. doi: 10.3390/plants12152814.

Abstract

Wheat stripe rust (WSR) is an airborne disease that causes severe damage to wheat. The rapid and early detection of WSR is essential for the prevention and control of this disease. The minimum detection limit (MDL) is one of the most important characteristics of quantitative methods that can be used to determine the scope and applicability of a measurement technique. Three wheat cultivars were inoculated with f.sp. (), and a spectrometer was used to collect the canopy hyperspectral data, and the content was obtained via a duplex real-time polymerase chain reaction (PCR) during the latent period, respectively. The disease index (DI) and molecular disease index (MDI) were calculated. The regression tree algorithm was used to determine the MDL of the based on hyperspectral feature parameters. The logistic, IBK, and random committee algorithms were used to construct the classification model based on the MDL. The results showed that when the MDL was 0.7, IBK had the best recognition accuracy. The optimal model, which used the spectral feature R_2nd.dv ((the second derivative of the original hyperspectral value)) and the modeling ratio 2:1, had an accuracy of 91.67% on the testing set and 90.67% on the 10-fold cross-validation. Thus, during the latent period, the MDL of was determined using hyperspectral technology as 0.7.

摘要

小麦条锈病是一种气传病害,会对小麦造成严重损害。快速早期检测小麦条锈病对于该病的预防和控制至关重要。最低检测限(MDL)是定量方法的最重要特征之一,可用于确定测量技术的范围和适用性。用条锈菌()接种三个小麦品种,在潜伏期分别用光谱仪采集冠层高光谱数据,并通过双重实时聚合酶链反应(PCR)获得条锈菌含量。计算病情指数(DI)和分子病情指数(MDI)。利用回归树算法基于高光谱特征参数确定条锈菌的最低检测限。基于最低检测限,使用逻辑回归、IBK和随机委员会算法构建分类模型。结果表明,当最低检测限为0.7时,IBK具有最佳识别准确率。使用光谱特征R_2nd.dv(原始高光谱值的二阶导数)和建模比例2:1的最优模型,在测试集上的准确率为91.67%,在十折交叉验证上的准确率为90.67%。因此,在潜伏期,利用高光谱技术确定条锈菌的最低检测限为0.7。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d8fb/10420842/787e44d37370/plants-12-02814-g001a.jpg

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