• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于扩张残差特征金字塔网络的小鼠视网膜图像分割

Dilated residual FPN-based segmentation for mouse retinal images.

作者信息

Che Zhihao, Bi Fukun, Sun Yu, Xing Weiying, Huang Hui, Zhang Xinyue

机构信息

School of Information Science and Technology, North China University of Technology, Beijing, China.

School of Traditional Chinese Medicine, Beijing University of Chinese Medicine, Beijing, China.

出版信息

Heliyon. 2023 Jul 25;9(8):e18605. doi: 10.1016/j.heliyon.2023.e18605. eCollection 2023 Aug.

DOI:10.1016/j.heliyon.2023.e18605
PMID:37576244
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10413074/
Abstract

BACKGROUND AND OBJECTIVE

Diabetes can induce diabetic retinopathy (DR), and the blindness caused by this disease is irreversible. The early analysis of mouse retinal images, including the layer and cell segmentation properties of these images, can help to effectively diagnose this disease.

METHOD

In the study, we design a dilated residual method based on a feature pyramid network (FPN), in which the FPN is adopted as the base network for solving the multiscale segmentation problem concerning mouse retinal images. In the bottom-up encoding pathway, we construct our backbone feature extraction network via the combination of dilated convolution and a residual block, further increasing the range of the receptive field to obtain more context information. At the same time, we integrate a squeeze-and-excitation (SE) attention module into the backbone network to obtain more small object details. In the top-down decoding pathway, we replace the traditional nearest-neighbor upsampling method with the transposed convolution method and add a segmentation head to obtain semantic segmentation results.

RESULTS

The effectiveness of our network model is verified in two segmentation tasks: ganglion cell segmentation and mouse retinal cell and layer segmentation. The outcomes demonstrate that, compared to other supervised segmentation methods based on deep learning, our model attains the utmost precision in both binary segmentation and multiclass semantic segmentation tasks.

CONCLUSION

The dilated residual FPN is a robust method for mouse retinal image segmentation and it can effectively assist DR diagnosis.

摘要

背景与目的

糖尿病可引发糖尿病性视网膜病变(DR),该疾病导致的失明是不可逆的。对小鼠视网膜图像进行早期分析,包括这些图像的层和细胞分割特性,有助于有效诊断该疾病。

方法

在本研究中,我们设计了一种基于特征金字塔网络(FPN)的扩张残差方法,其中采用FPN作为基础网络来解决小鼠视网膜图像的多尺度分割问题。在自底向上的编码路径中,我们通过扩张卷积和残差块的组合构建主干特征提取网络,进一步扩大感受野范围以获取更多上下文信息。同时,我们将挤压激励(SE)注意力模块集成到主干网络中以获取更多小目标细节。在自顶向下的解码路径中,我们用转置卷积方法取代传统的最近邻上采样方法,并添加一个分割头以获得语义分割结果。

结果

我们的网络模型在两项分割任务中得到验证:神经节细胞分割以及小鼠视网膜细胞和层分割。结果表明,与其他基于深度学习的监督分割方法相比,我们的模型在二值分割和多类语义分割任务中均达到最高精度。

结论

扩张残差FPN是一种用于小鼠视网膜图像分割的稳健方法,能够有效辅助DR诊断。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38f7/10413074/f426c8f0441e/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38f7/10413074/e0b203c54a3d/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38f7/10413074/b4736bc64146/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38f7/10413074/56b753b0627f/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38f7/10413074/7a7b6c1cd376/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38f7/10413074/55b25b5dde72/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38f7/10413074/f426c8f0441e/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38f7/10413074/e0b203c54a3d/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38f7/10413074/b4736bc64146/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38f7/10413074/56b753b0627f/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38f7/10413074/7a7b6c1cd376/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38f7/10413074/55b25b5dde72/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38f7/10413074/f426c8f0441e/gr6.jpg

相似文献

1
Dilated residual FPN-based segmentation for mouse retinal images.基于扩张残差特征金字塔网络的小鼠视网膜图像分割
Heliyon. 2023 Jul 25;9(8):e18605. doi: 10.1016/j.heliyon.2023.e18605. eCollection 2023 Aug.
2
ADR-Net: Context extraction network based on M-Net for medical image segmentation.ADR-Net:基于M-Net的医学图像分割上下文提取网络。
Med Phys. 2020 Sep;47(9):4254-4264. doi: 10.1002/mp.14364. Epub 2020 Aug 2.
3
DMCT-Net: dual modules convolution transformer network for head and neck tumor segmentation in PET/CT.DMCT-Net:用于 PET/CT 中头颈部肿瘤分割的双模块卷积变换网络。
Phys Med Biol. 2023 May 22;68(11). doi: 10.1088/1361-6560/acd29f.
4
A Multi-Scale Context Aware Attention Model for Medical Image Segmentation.一种用于医学图像分割的多尺度上下文感知注意力模型。
IEEE J Biomed Health Inform. 2023 Aug;27(8):3731-3739. doi: 10.1109/JBHI.2022.3227540. Epub 2023 Aug 7.
5
Fully connected network with multi-scale dilation convolution module in evaluating atrial septal defect based on MRI segmentation.基于 MRI 分割的全连接网络与多尺度扩张卷积模块评估房间隔缺损
Comput Methods Programs Biomed. 2022 Mar;215:106608. doi: 10.1016/j.cmpb.2021.106608. Epub 2022 Jan 11.
6
SAR-U-Net: Squeeze-and-excitation block and atrous spatial pyramid pooling based residual U-Net for automatic liver segmentation in Computed Tomography.SAR-U-Net:基于挤压激励模块和空洞空间金字塔池化的残差 U-Net 用于 CT 肝脏自动分割。
Comput Methods Programs Biomed. 2021 Sep;208:106268. doi: 10.1016/j.cmpb.2021.106268. Epub 2021 Jul 6.
7
GC-Net: Global context network for medical image segmentation.GC-Net:用于医学图像分割的全局上下文网络。
Comput Methods Programs Biomed. 2020 Jul;190:105121. doi: 10.1016/j.cmpb.2019.105121. Epub 2019 Oct 4.
8
A multiple-channel and atrous convolution network for ultrasound image segmentation.一种用于超声图像分割的多通道多孔卷积网络。
Med Phys. 2020 Dec;47(12):6270-6285. doi: 10.1002/mp.14512. Epub 2020 Oct 18.
9
Retinal Vessel Segmentation Algorithm Based on Residual Convolution Neural Network.基于残差卷积神经网络的视网膜血管分割算法
Front Bioeng Biotechnol. 2021 Dec 10;9:786425. doi: 10.3389/fbioe.2021.786425. eCollection 2021.
10
Hybrid dilation and attention residual U-Net for medical image segmentation.混合扩张和注意力残差 U-Net 用于医学图像分割。
Comput Biol Med. 2021 Jul;134:104449. doi: 10.1016/j.compbiomed.2021.104449. Epub 2021 May 11.

本文引用的文献

1
Multiscale attention guided U-Net architecture for cardiac segmentation in short-axis MRI images.多尺度注意引导 U-Net 架构在短轴 MRI 图像中的心脏分割。
Comput Methods Programs Biomed. 2021 Jul;206:106142. doi: 10.1016/j.cmpb.2021.106142. Epub 2021 May 4.
2
Optic disc and optic cup segmentation based on anatomy guided cascade network.基于解剖结构引导级联网络的视盘和视杯分割。
Comput Methods Programs Biomed. 2020 Dec;197:105717. doi: 10.1016/j.cmpb.2020.105717. Epub 2020 Aug 27.
3
A review of thyroid gland segmentation and thyroid nodule segmentation methods for medical ultrasound images.
医学超声图像的甲状腺腺体分割和甲状腺结节分割方法综述。
Comput Methods Programs Biomed. 2020 Mar;185:105329. doi: 10.1016/j.cmpb.2020.105329. Epub 2020 Jan 9.
4
Scale-space approximated convolutional neural networks for retinal vessel segmentation.用于视网膜血管分割的尺度空间逼近卷积神经网络。
Comput Methods Programs Biomed. 2019 Sep;178:237-246. doi: 10.1016/j.cmpb.2019.06.030. Epub 2019 Jun 29.
5
Diabetic retinopathy: current understanding, mechanisms, and treatment strategies.糖尿病视网膜病变:当前的认识、机制及治疗策略
JCI Insight. 2017 Jul 20;2(14). doi: 10.1172/jci.insight.93751.
6
Faster R-CNN: Towards Real-Time Object Detection with Region Proposal Networks.更快的 R-CNN:基于区域建议网络的实时目标检测。
IEEE Trans Pattern Anal Mach Intell. 2017 Jun;39(6):1137-1149. doi: 10.1109/TPAMI.2016.2577031. Epub 2016 Jun 6.
7
Fully Convolutional Networks for Semantic Segmentation.全卷积网络用于语义分割。
IEEE Trans Pattern Anal Mach Intell. 2017 Apr;39(4):640-651. doi: 10.1109/TPAMI.2016.2572683. Epub 2016 May 24.
8
Quantitative Analysis of Mouse Retinal Layers Using Automated Segmentation of Spectral Domain Optical Coherence Tomography Images.使用光谱域光学相干断层扫描图像的自动分割对小鼠视网膜层进行定量分析
Transl Vis Sci Technol. 2015 Aug 25;4(4):9. doi: 10.1167/tvst.4.4.9. eCollection 2015 Aug.
9
Automatic segmentation of up to ten layer boundaries in SD-OCT images of the mouse retina with and without missing layers due to pathology.在存在和不存在因病理导致的层缺失的情况下,自动分割小鼠视网膜SD-OCT图像中多达十个层边界。
Biomed Opt Express. 2014 Jan 7;5(2):348-65. doi: 10.1364/BOE.5.000348. eCollection 2014 Feb 1.
10
Blood vessel segmentation methodologies in retinal images--a survey.视网膜图像中的血管分割方法综述。
Comput Methods Programs Biomed. 2012 Oct;108(1):407-33. doi: 10.1016/j.cmpb.2012.03.009. Epub 2012 Apr 22.