Institute of Biological Chemistry, Academia Sinica, 11529, Taipei, Taiwan.
Institute of Biochemical Sciences, National Taiwan University, 10617, Taipei, Taiwan.
Nat Commun. 2023 Aug 17;14(1):4993. doi: 10.1038/s41467-023-40672-5.
ATP-dependent RAD51 recombinases play an essential role in eukaryotic homologous recombination by catalyzing a four-step process: 1) formation of a RAD51 single-filament assembly on ssDNA in the presence of ATP, 2) complementary DNA strand-exchange, 3) ATP hydrolysis transforming the RAD51 filament into an ADP-bound disassembly-competent state, and 4) RAD51 disassembly to provide access for DNA repairing enzymes. Of these steps, filament dynamics between the ATP- and ADP-bound states, and the RAD51 disassembly mechanism, are poorly understood due to the lack of near-atomic-resolution information of the ADP-bound RAD51-DNA filament structure. We report the cryo-EM structure of ADP-bound RAD51-DNA filaments at 3.1 Å resolution, revealing a unique RAD51 double-filament that wraps around ssDNA. Structural analysis, supported by ATP-chase and time-resolved cryo-EM experiments, reveals a collapsing mechanism involving two four-protomer movements along ssDNA for mechanical transition between RAD51 single- and double-filament without RAD51 dissociation. This mechanism enables elastic change of RAD51 filament length during structural transitions between ATP- and ADP-states.
ATP 依赖的 RAD51 重组酶通过催化四步反应在真核同源重组中发挥重要作用:1)在 ATP 存在下形成 RAD51 在 ssDNA 上的单丝组装,2)互补 DNA 链交换,3)ATP 水解将 RAD51 丝转化为 ADP 结合的解组装状态,以及 4)RAD51 解组装以提供 DNA 修复酶的进入途径。在这些步骤中,由于缺乏 ADP 结合的 RAD51-DNA 丝结构的近原子分辨率信息,因此对 ATP 和 ADP 结合状态之间的丝动力学以及 RAD51 解组装机制知之甚少。我们报告了 3.1Å 分辨率的 ADP 结合 RAD51-DNA 丝的冷冻电镜结构,揭示了一种独特的 RAD51 双丝,它缠绕在 ssDNA 周围。结构分析得到 ATP 追踪和时间分辨冷冻电镜实验的支持,揭示了一种涉及两个四聚体沿 ssDNA 运动的崩溃机制,用于在 RAD51 单丝和双丝之间进行机械转换,而无需 RAD51 解离。该机制使 RAD51 丝在 ATP 和 ADP 状态之间的结构转变过程中能够进行弹性长度变化。