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RAD51-ADP 双丝结构揭示同源重组中丝动态的机制。

A RAD51-ADP double filament structure unveils the mechanism of filament dynamics in homologous recombination.

机构信息

Institute of Biological Chemistry, Academia Sinica, 11529, Taipei, Taiwan.

Institute of Biochemical Sciences, National Taiwan University, 10617, Taipei, Taiwan.

出版信息

Nat Commun. 2023 Aug 17;14(1):4993. doi: 10.1038/s41467-023-40672-5.

Abstract

ATP-dependent RAD51 recombinases play an essential role in eukaryotic homologous recombination by catalyzing a four-step process: 1) formation of a RAD51 single-filament assembly on ssDNA in the presence of ATP, 2) complementary DNA strand-exchange, 3) ATP hydrolysis transforming the RAD51 filament into an ADP-bound disassembly-competent state, and 4) RAD51 disassembly to provide access for DNA repairing enzymes. Of these steps, filament dynamics between the ATP- and ADP-bound states, and the RAD51 disassembly mechanism, are poorly understood due to the lack of near-atomic-resolution information of the ADP-bound RAD51-DNA filament structure. We report the cryo-EM structure of ADP-bound RAD51-DNA filaments at 3.1 Å resolution, revealing a unique RAD51 double-filament that wraps around ssDNA. Structural analysis, supported by ATP-chase and time-resolved cryo-EM experiments, reveals a collapsing mechanism involving two four-protomer movements along ssDNA for mechanical transition between RAD51 single- and double-filament without RAD51 dissociation. This mechanism enables elastic change of RAD51 filament length during structural transitions between ATP- and ADP-states.

摘要

ATP 依赖的 RAD51 重组酶通过催化四步反应在真核同源重组中发挥重要作用:1)在 ATP 存在下形成 RAD51 在 ssDNA 上的单丝组装,2)互补 DNA 链交换,3)ATP 水解将 RAD51 丝转化为 ADP 结合的解组装状态,以及 4)RAD51 解组装以提供 DNA 修复酶的进入途径。在这些步骤中,由于缺乏 ADP 结合的 RAD51-DNA 丝结构的近原子分辨率信息,因此对 ATP 和 ADP 结合状态之间的丝动力学以及 RAD51 解组装机制知之甚少。我们报告了 3.1Å 分辨率的 ADP 结合 RAD51-DNA 丝的冷冻电镜结构,揭示了一种独特的 RAD51 双丝,它缠绕在 ssDNA 周围。结构分析得到 ATP 追踪和时间分辨冷冻电镜实验的支持,揭示了一种涉及两个四聚体沿 ssDNA 运动的崩溃机制,用于在 RAD51 单丝和双丝之间进行机械转换,而无需 RAD51 解离。该机制使 RAD51 丝在 ATP 和 ADP 状态之间的结构转变过程中能够进行弹性长度变化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b4e4/10435448/692e7de8e5aa/41467_2023_40672_Fig1_HTML.jpg

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