School of Agriculture, Food and Wine, and the Waite Research Institute, University of Adelaide, Glen Osmond, South Australia 5064, Australia.
Howard Hughes Medical Institute and Department of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA 22908, USA.
Plant Physiol. 2023 Dec 30;194(1):33-50. doi: 10.1093/plphys/kiad415.
Recent breakthroughs in structural biology have provided valuable new insights into enzymes involved in plant cell wall metabolism. More specifically, the molecular mechanism of synthesis of (1,3;1,4)-β-glucans, which are widespread in cell walls of commercially important cereals and grasses, has been the topic of debate and intense research activity for decades. However, an inability to purify these integral membrane enzymes or apply transgenic approaches without interpretative problems associated with pleiotropic effects has presented barriers to attempts to define their synthetic mechanisms. Following the demonstration that some members of the CslF sub-family of GT2 family enzymes mediate (1,3;1,4)-β-glucan synthesis, the expression of the corresponding genes in a heterologous system that is free of background complications has now been achieved. Biochemical analyses of the (1,3;1,4)-β-glucan synthesized in vitro, combined with 3-dimensional (3D) cryogenic-electron microscopy and AlphaFold protein structure predictions, have demonstrated how a single CslF6 enzyme, without exogenous primers, can incorporate both (1,3)- and (1,4)-β-linkages into the nascent polysaccharide chain. Similarly, 3D structures of xyloglucan endo-transglycosylases and (1,3;1,4)-β-glucan endo- and exohydrolases have allowed the mechanisms of (1,3;1,4)-β-glucan modification and degradation to be defined. X-ray crystallography and multi-scale modeling of a broad specificity GH3 β-glucan exohydrolase recently revealed a previously unknown and remarkable molecular mechanism with reactant trajectories through which a polysaccharide exohydrolase can act with a processive action pattern. The availability of high-quality protein 3D structural predictions should prove invaluable for defining structures, dynamics, and functions of other enzymes involved in plant cell wall metabolism in the immediate future.
最近在结构生物学方面的突破为我们提供了有价值的新见解,使我们能够深入了解参与植物细胞壁代谢的酶。更具体地说,(1,3;1,4)-β-葡聚糖合成的分子机制是几十年来争论和深入研究的主题。然而,由于无法纯化这些整合膜酶,或者由于多效性相关的解释问题而无法应用转基因方法,因此尝试定义其合成机制的尝试遇到了障碍。在证明 GT2 家族酶的 CslF 亚家族的某些成员介导(1,3;1,4)-β-葡聚糖合成之后,现在已经在没有背景复杂性相关解释问题的异源系统中实现了相应基因的表达。体外合成的(1,3;1,4)-β-葡聚糖的生化分析,结合 3 维(3D)低温电子显微镜和 AlphaFold 蛋白结构预测,证明了单个 CslF6 酶如何在没有外源引物的情况下,将(1,3)-和(1,4)-β-键合到新生多糖链中。同样,木葡聚糖内切糖基转移酶和(1,3;1,4)-β-葡聚糖内切和外切水解酶的 3D 结构允许定义(1,3;1,4)-β-葡聚糖修饰和降解的机制。最近,对广泛特异性 GH3 β-葡聚糖外切水解酶的 X 射线晶体学和多尺度建模揭示了一种以前未知的、引人注目的分子机制,其中有反应物轨迹,多糖外切水解酶可以通过该轨迹以连续作用模式发挥作用。高质量蛋白质 3D 结构预测的可用性应该在不久的将来对定义参与植物细胞壁代谢的其他酶的结构、动态和功能非常有价值。