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盘菌纲真菌基因组揭示了腐生和外生菌根生活方式所特有的多样细胞色素P450基因组合。

Pezizomycetes Genomes Reveal Diverse P450 Complements Characteristic of Saprotrophic and Ectomycorrhizal Lifestyles.

作者信息

Nsele Nomfundo Ntombizinhle, Padayachee Tiara, Nelson David R, Syed Khajamohiddin

机构信息

Department of Biochemistry and Microbiology, Faculty of Science and Agriculture, University of Zululand, KwaDlangezwa 3886, South Africa.

Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, TN 38163, USA.

出版信息

J Fungi (Basel). 2023 Aug 6;9(8):830. doi: 10.3390/jof9080830.

DOI:10.3390/jof9080830
PMID:37623601
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10455484/
Abstract

Cytochrome P450 monooxygenases (CYPs/P450s) are heme proteins that play a role in organisms' primary and secondary metabolism. P450s play an important role in organism adaptation since lifestyle influences P450 composition in their genome. This phenomenon is well-documented in bacteria but less so in fungi. This study observed this phenomenon where diverse P450 complements were identified in saprophytic and ectomycorrhizal Pezizomycetes. Genome-wide data mining, annotation, and phylogenetic analysis of P450s in 19 Pezizomycetes revealed 668 P450s that can be grouped into 153 P450 families and 245 P450 subfamilies. Only four P450 families, namely, CYP51, CYP61, CYP5093, and CYP6001, are conserved across 19 Pezizomycetes, indicating their important role in these species. A total of 5 saprophyte Pezizomycetes have 103 P450 families, whereas 14 ectomycorrhizal Pezizomycetes have 89 P450 families. Only 39 P450 families were common, and 50 and 64 P450 families, respectively, were unique to ectomycorrhizal and saprophytic Pezizomycetes. These findings suggest that the switch from a saprophytic to an ectomycorrhizal lifestyle led to both the development of diverse P450 families as well as the loss of P450s, which led to the lowest P450 family diversity, despite the emergence of novel P450 families in ectomycorrhizal Pezizomycetes.

摘要

细胞色素P450单加氧酶(CYPs/P450s)是血红素蛋白,在生物体的初级和次级代谢中发挥作用。由于生活方式会影响其基因组中的P450组成,因此P450在生物体适应过程中起着重要作用。这种现象在细菌中有充分记录,但在真菌中则较少。本研究观察到在腐生和外生菌根盘菌中鉴定出不同的P450互补体的这一现象。对19种盘菌的P450进行全基因组数据挖掘、注释和系统发育分析,发现668个P450可分为153个P450家族和245个P450亚家族。在19种盘菌中仅四个P450家族,即CYP51、CYP61、CYP5093和CYP6001是保守的,表明它们在这些物种中的重要作用。共有5种腐生盘菌有103个P450家族,而14种外生菌根盘菌有89个P450家族。只有39个P450家族是共有的,外生菌根盘菌和腐生盘菌分别有50个和64个独特的P450家族。这些发现表明,从腐生生活方式向外生菌根生活方式的转变导致了不同P450家族的发展以及P450的丧失,尽管外生菌根盘菌中出现了新的P450家族,但这导致了P450家族多样性最低。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b07/10455484/976bfe862117/jof-09-00830-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b07/10455484/11907a7709c3/jof-09-00830-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b07/10455484/bdccd0e30307/jof-09-00830-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b07/10455484/345119432e5b/jof-09-00830-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b07/10455484/976bfe862117/jof-09-00830-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b07/10455484/11907a7709c3/jof-09-00830-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b07/10455484/bdccd0e30307/jof-09-00830-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b07/10455484/345119432e5b/jof-09-00830-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3b07/10455484/976bfe862117/jof-09-00830-g004.jpg

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