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基于纳米孔长读测序数据获得的完整质体基因组序列对沉水草的系统发育定位。

Phylogenetic placement of Ceratophyllum submersum based on a complete plastome sequence derived from nanopore long read sequencing data.

机构信息

Plant Biotechnology and Bioinformatics, Institute of Plant Biology, TU Braunschweig, 38106, Braunschweig, Germany.

Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcká 129, Praha 6 - Suchdol, CZ-165 21, Prague, Czech Republic.

出版信息

BMC Res Notes. 2023 Aug 25;16(1):187. doi: 10.1186/s13104-023-06459-z.

Abstract

OBJECTIVE

Eutrophication poses a mounting concern in today's world. Ceratophyllum submersum L. is one of many plants capable of living in eutrophic conditions, therefore it could play a critical role in addressing the problem of eutrophication. This study aimed to take a first genomic look at C. submersum.

RESULTS

Sequencing of gDNA from C. submersum yielded enough reads to assemble a plastome. Subsequent annotation and phylogenetic analysis validated existing information regarding angiosperm relationships and the positioning of Ceratophylalles in a wider phylogenetic context.

摘要

目的

富营养化是当今世界面临的一个日益严重的问题。水蕴草是能够在富营养条件下生存的众多植物之一,因此它在解决富营养化问题方面可能发挥着至关重要的作用。本研究旨在对水蕴草进行首次基因组研究。

结果

对水蕴草的 gDNA 进行测序,得到了足够的reads 来组装质体基因组。随后的注释和系统发育分析验证了关于被子植物关系以及在更广泛的系统发育背景下水蕴草科定位的现有信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4ed2/10464454/67dcdfa6b7ca/13104_2023_6459_Fig1_HTML.jpg

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