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菊科(菊科植物)的完整叶绿体基因组及系统发育分析

Complete chloroplast genome and phylogenetic analysis of (Asteraceae).

作者信息

Yin Juan, Wang Zhen, Ma Guihua, Liu Wenjing

机构信息

Forestry College, Xinyang Agriculture and Forestry University, Xinyang, Henan, China.

出版信息

Mitochondrial DNA B Resour. 2023 Aug 25;8(8):916-920. doi: 10.1080/23802359.2023.2248683. eCollection 2023.

DOI:10.1080/23802359.2023.2248683
PMID:37645475
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10461496/
Abstract

(Asteraceae), is an important food plant in the world. There is no systematic report on the chloroplast genome of . Here we reported its complete chloroplast genome and analyzed the basic characteristics. The chloroplast genome was 152,301 bp in length, had a GC content of 37.55%, and encoded 113 unique genes, including 79 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. Phylogenetic analysis showed that the tribe Millerieae and the tribe Madieae are closely related in the Asteraceae family. In the tribe Millerieae, was more closely related to and . This chloroplast genome not only enriches the genome information of , but also lays the foundation for understanding the phylogeny within the genus .

摘要

(菊科)是世界上一种重要的食用植物。关于[植物名称]叶绿体基因组尚无系统报道。在此,我们报道了其完整的叶绿体基因组并分析了基本特征。叶绿体基因组长度为152,301 bp,GC含量为37.55%,编码113个独特基因,包括79个蛋白质编码基因、4个核糖体RNA基因和30个转运RNA基因。系统发育分析表明,菊科中的千里光族和麻迪菊族亲缘关系密切。在千里光族中,[植物名称]与[其他植物名称1]和[其他植物名称2]关系更为密切。该叶绿体基因组不仅丰富了[植物名称]的基因组信息,也为理解该属内的系统发育奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ed8/10461496/4e1320fc5f16/TMDN_A_2248683_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ed8/10461496/41be26364225/TMDN_A_2248683_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ed8/10461496/ce90718094d0/TMDN_A_2248683_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ed8/10461496/4e1320fc5f16/TMDN_A_2248683_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ed8/10461496/41be26364225/TMDN_A_2248683_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ed8/10461496/ce90718094d0/TMDN_A_2248683_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ed8/10461496/4e1320fc5f16/TMDN_A_2248683_F0003_B.jpg

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Mol Ecol Resour. 2022 Nov;22(8):3124-3140. doi: 10.1111/1755-0998.13675. Epub 2022 Jul 4.
2
Phylotranscriptomic insights into Asteraceae diversity, polyploidy, and morphological innovation.菊科多样性、多倍体和形态创新的系统转录组学见解。
J Integr Plant Biol. 2021 Jul;63(7):1273-1293. doi: 10.1111/jipb.13078. Epub 2021 May 4.
3
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4
PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies.PhyloSuite:一个集成的、可扩展的桌面平台,用于简化分子序列数据管理和进化系统发育研究。
Mol Ecol Resour. 2020 Jan;20(1):348-355. doi: 10.1111/1755-0998.13096. Epub 2019 Nov 6.
5
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.PGA:一个用于叶绿体基因组快速、准确且灵活批量注释的软件包。
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6
CPGAVAS2, an integrated plastome sequence annotator and analyzer.CPGAVAS2,一个集成的质体基因组序列注释和分析器。
Nucleic Acids Res. 2019 Jul 2;47(W1):W65-W73. doi: 10.1093/nar/gkz345.
7
GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
Nucleic Acids Res. 2017 Jul 3;45(W1):W6-W11. doi: 10.1093/nar/gkx391.
8
ModelFinder: fast model selection for accurate phylogenetic estimates.ModelFinder:用于准确系统发育估计的快速模型选择
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9
MISA-web: a web server for microsatellite prediction.MISA-web:一个用于微卫星预测的网络服务器。
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10
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Bioinformatics. 2015 Oct 15;31(20):3350-2. doi: 10.1093/bioinformatics/btv383. Epub 2015 Jun 22.