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利用信息检测六倍体在低温处理后与腋芽发育相关的转录因子。

Detection of Transcription Factors Related to Axillary Bud Development after Exposure to Cold Conditions in Hexaploid Using Information.

作者信息

Tanaka Tsuyoshi, Sasaki Katsutomo

机构信息

Research Center for Advanced Analysis, National Agriculture and Food Research Organization (NARO), 2-1-2 Kannondai, Tsukuba 305-8518, Ibaraki, Japan.

Institute of Vegetable and Floriculture Science, National Agriculture and Food Research Organization (NARO), 2-1 Fujimoto, Tsukuba 305-0852, Ibaraki, Japan.

出版信息

Plants (Basel). 2023 Aug 30;12(17):3122. doi: 10.3390/plants12173122.

Abstract

Chrysanthemum is one of the most commercially used ornamental flowering plants in the world. As chrysanthemum is self-incompatible, the propagation of identical varieties is carried out through cuttings rather than through seed. Axillary bud development can be controlled by changing the temperature; for instance, axillary bud development in some varieties is suppressed at high temperatures. In this study, we focused on the simultaneous axillary bud growth from multiple lines of chrysanthemum upon changing conditions from low to normal temperature. Transcriptome analysis was conducted on the cultivar 'Jinba' to identify the important genes for axillary bud development seen when moved from low-temperature treatment to normal cultivation temperature. We performed RNA-Seq analysis on plants after cold conditions in two-day time-course experiments. Under these settings, we constructed a transcriptome of 415,923 and extracted 7357 differentially expressed genes. Our understanding of axillary meristem development and growth showed that at least 101 genes in our dataset were homologous to transcription factors involved in the biological process. In addition, six genes exhibited statistically significant variations in expression throughout conditions. We hypothesized that these genes were involved in the formation of axillary buds in after cold conditions.

摘要

菊花是世界上商业用途最广泛的观赏开花植物之一。由于菊花自交不亲和,相同品种的繁殖是通过扦插而非种子进行的。腋芽发育可通过改变温度来控制;例如,某些品种的腋芽发育在高温下会受到抑制。在本研究中,我们关注了菊花从低温条件转变为正常温度条件时多条植株上腋芽的同步生长情况。对‘金巴’品种进行了转录组分析,以鉴定从低温处理转移到正常栽培温度时腋芽发育的重要基因。我们在为期两天的时间进程实验中,对处于寒冷条件后的植株进行了RNA测序分析。在这些条件下,我们构建了一个包含415,923个转录本的转录组,并提取了7357个差异表达基因。我们对腋生分生组织发育和生长的了解表明,数据集中至少有101个基因与参与该生物学过程的转录因子同源。此外,有六个基因在所有条件下的表达均表现出统计学上的显著差异。我们推测这些基因参与了寒冷条件后腋芽的形成。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e278/10490133/e88a1cf85c0e/plants-12-03122-g001.jpg

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