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机器学习在“多组学”海洋代谢物数据集上的应用综述

A critical review of machine-learning for "multi-omics" marine metabolite datasets.

机构信息

School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore, 632014, India.

School of Information Technology and Engineering, Vellore Institute of Technology, Vellore, 632014, India.

出版信息

Comput Biol Med. 2023 Oct;165:107425. doi: 10.1016/j.compbiomed.2023.107425. Epub 2023 Aug 29.

Abstract

During the last decade, genomic, transcriptomic, proteomic, metabolomic, and other omics datasets have been generated for a wide range of marine organisms, and even more are still on the way. Marine organisms possess unique and diverse biosynthetic pathways contributing to the synthesis of novel secondary metabolites with significant bioactivities. As marine organisms have a greater tendency to adapt to stressed environmental conditions, the chance to identify novel bioactive metabolites with potential biotechnological application is very high. This review presents a comprehensive overview of the available "-omics" and "multi-omics" approaches employed for characterizing marine metabolites along with novel data integration tools. The need for the development of machine-learning algorithms for "multi-omics" approaches is briefly discussed. In addition, the challenges involved in the analysis of "multi-omics" data and recommendations for conducting "multi-omics" study were discussed.

摘要

在过去的十年中,已经为广泛的海洋生物生成了基因组、转录组、蛋白质组、代谢组和其他组学数据集,甚至还有更多的数据集正在生成中。海洋生物拥有独特而多样的生物合成途径,有助于合成具有显著生物活性的新型次生代谢物。由于海洋生物更倾向于适应压力环境条件,因此有很大的机会发现具有潜在生物技术应用的新型生物活性代谢物。本综述全面介绍了用于表征海洋代谢物的现有“组学”和“多组学”方法,以及新颖的数据集成工具。简要讨论了开发用于“多组学”方法的机器学习算法的必要性。此外,还讨论了“多组学”数据分析所涉及的挑战以及进行“多组学”研究的建议。

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