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嗜盐海洋菌属 sediminicola sp. nov.,一种新型中度嗜盐、代谢多样的细菌,从太阳能盐场沉积物中分离得到,与玫瑰杆菌科成员的比较。

Psychromarinibacter sediminicola sp. nov., a novel moderately halophilic, metabolically diverse bacterium isolated from a solar saltern sediment, and comparison between members of family Roseobacteraceae.

机构信息

SDU-ANU Joint Science College, Shandong University, Weihai, 264209, Shandong, People's Republic of China.

Research School of Biology, Australian National University, Canberra, ACT, Australia.

出版信息

Arch Microbiol. 2023 Sep 12;205(10):331. doi: 10.1007/s00203-023-03672-z.

Abstract

Known for its species abundance and evolutionary status complexity, family Roseobacteraceae is an important subject of many studies on the discovery, identification, taxonomic status, and ecological properties of marine bacteria. This study compared and analyzed the phylogenetic, genomic, biochemical, and chemo taxonomical properties of seven species from three genera (Psychromarinibacter, Lutimaribacter, and Maritimibacter) of the family Roseobacteraceae. Moreover, a novel strain, named C21-152 was isolated from solar saltern sediment in Weihai, China. The values of 16S rRNA gene sequence similarity, the average nucleotide identity (ANI), the average amino acid identity (AAI), and the digital DNA-DNA hybridization (dDDH) between genomes of the novel strain and Psychromarinibacter halotolerans MCCC 1K03203 were 97.19, 78.49, 73.45, and 21.90%, respectively. Genome sequencing of strain C21-152 revealed a complete Sox enzyme system related to thiosulfate oxidization as well as a complete pathway for the final conversion of hydroxyproline to α-ketoglutarate. In addition, strain C21-152 was resistant to many antibiotics and had the ability to survive below 13% salinity. This strain had versatile survival strategies in saline environments including salt-in, compatible solute production and compatible solute transport. Some of its physiological features enriched and complemented the knowledge of the characteristics of the genus Psychromarinibacter. Optimum growth of strain C21-152 occurred at 37 ℃, with 5-6% (w/v) NaCl and at pH 7.5. According to the results of the phenotypic, chemotaxonomic characterization, phylogenetic properties and genome analysis, strain C21-152 should represent a novel specie of the genus Psychromarinibacter, for which the name Psychromarinibacter sediminicola sp. nov. is proposed. The type strain is C21-152 (= MCCC 1H00808 = KCTC 92746 = SDUM1063002).

摘要

该家族以物种丰富度和进化地位复杂性而闻名,是许多海洋细菌发现、鉴定、分类地位和生态特性研究的重要对象。本研究比较和分析了三个属(Psychromarinibacter、Lutimaribacter 和 Maritimibacter)的七个种的系统发育、基因组、生化和化学分类特性。此外,从中国威海太阳能盐场沉积物中分离到一株新的菌株,命名为 C21-152。新菌株与 Psychromarinibacter halotolerans MCCC 1K03203 的 16S rRNA 基因序列相似性、平均核苷酸同一性(ANI)、平均氨基酸同一性(AAI)和数字 DNA-DNA 杂交(dDDH)值分别为 97.19%、78.49%、73.45%和 21.90%。C21-152 基因组测序揭示了一个完整的 Sox 酶系统,与硫代硫酸盐氧化有关,以及一个完整的途径将羟脯氨酸最终转化为α-酮戊二酸。此外,C21-152 菌株对许多抗生素具有抗性,并能在低于 13%盐度的环境中存活。该菌株在盐环境中有多种生存策略,包括盐内、相容溶质的产生和相容溶质的运输。其一些生理特征丰富和补充了 Psychromarinibacter 属特征的知识。C21-152 菌株的最佳生长条件为 37℃、5-6%(w/v)NaCl 和 pH7.5。根据表型、化学分类特征、系统发育特性和基因组分析的结果,C21-152 菌株应代表 Psychromarinibacter 属的一个新种,命名为 Psychromarinibacter sediminicola sp. nov.。模式菌株为 C21-152(= MCCC 1H00808 = KCTC 92746 = SDUM1063002)。

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