Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prol. de Carpio y Plan de Ayala s/n, Col. Santo Tomás, Del Miguel Hidalgo, Mexico City, 11340, Mexico.
Universidad Politécnica del Estado de Morelos. Boulevard Cuauhnáhuac #566, Col. Lomas del Texcal, Jiutepec, Morelos, 62550, Mexico.
Int J Syst Evol Microbiol. 2023 Sep;73(9). doi: 10.1099/ijsem.0.006052.
Four Gram-positive, aerobic, catalase- and oxidase-negative, rod-shaped, motile endophytic bacterial strains, designated NM3R9, NE1TT3, NE2TL11 and NE2HP2, were isolated from the inner tissues (leaf and stem) of and roots of . They were characterized using a polyphasic approach, which revealed that they represent two novel species. Phylogenetic analysis based on 16S rRNA gene sequencing showed that the species closest to NE2HP2 was DSM 20754 (99.6 %) and that closest to NM3R9, NE2TL11 and NE2TT3 was NBRC 103075 (97.4 %). The whole-genome average nucleotide identity value between strain NM3R9 and DSM 20530 was 90.91 %, and that between strain NE2HP2 and DSM 20754 was 91.03 %. Digital DNA-DNA hybridization showed values of less than 70 % with the type strains of related species. The polar lipids present in both strains included diphosphatidylglycerol, phosphatidylglycerol, glycolipids and unidentified lipids, whereas the major fatty acids included anteiso-C, anteiso-C, iso-C and C. Whole-cell sugars included mannose, rhamnose and galactose. Strains NM3R9 and NE2HP2 showed physiological characteristics different from those present in closely related species. According to the taxonomic analysis, both strains belong to two novel species. The name sp. nov. is proposed for strain NE2HP2 (=LMG 30875=CCBAU 101117) and sp. nov. for strains NM3R9 (=LMG 30873=CCBAU 101116), NE1TT3 (=CCBAU 101114) and NE2TL11 (=CCBAU 101115).
四株革兰氏阳性、需氧、过氧化氢酶和氧化酶阴性、杆状、能动的内生细菌菌株,分别命名为 NM3R9、NE1TT3、NE2TL11 和 NE2HP2,从 和 的内部组织(叶和茎)和根部分离得到。它们通过多相鉴定方法进行了表征,结果表明它们代表了两个新的 种。基于 16S rRNA 基因测序的系统发育分析表明,与 NE2HP2 最接近的物种是 DSM 20754(99.6%),与 NM3R9、NE2TL11 和 NE2TT3 最接近的物种是 NBRC 103075(97.4%)。菌株 NM3R9 与 DSM 20530 之间的全基因组平均核苷酸同一性值为 90.91%,菌株 NE2HP2 与 DSM 20754 之间的全基因组平均核苷酸同一性值为 91.03%。数字 DNA-DNA 杂交显示与相关种的模式株的数值低于 70%。两种菌株中存在的极性脂包括二磷脂酰甘油、磷脂酰甘油、糖脂和未鉴定的脂类,而主要脂肪酸包括 anteiso-C、anteiso-C、iso-C 和 C。全细胞糖包括甘露糖、鼠李糖和半乳糖。菌株 NM3R9 和 NE2HP2 表现出与密切相关的 种不同的生理特征。根据分类分析,两种菌株均属于两个新种。建议将菌株 NE2HP2(=LMG 30875=CCBAU 101117)命名为 sp. nov.,将菌株 NM3R9(=LMG 30873=CCBAU 101116)、NE1TT3(=CCBAU 101114)和 NE2TL11(=CCBAU 101115)命名为 sp. nov.。