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希腊首次检测到ST308并对其进行分子特征分析。

First Detection and Molecular Characterization of ST308 in Greece.

作者信息

Tsilipounidaki Katerina, Gkountinoudis Christos-George, Florou Zoi, Fthenakis George C, Miriagou Vivi, Petinaki Efthymia

机构信息

Faculty of Medicine, University of Thessaly, 41500 Larissa, Greece.

Veterinary Faculty, University of Thessaly, 43100 Karditsa, Greece.

出版信息

Microorganisms. 2023 Aug 26;11(9):2159. doi: 10.3390/microorganisms11092159.

Abstract

The objective of the present study is to report the detection and the molecular characterization of nine -positive isolates, all of which belonged to the epidemic high-risk international clone ST308, and all were isolated from patients in a tertiary care hospital in Central Greece from May to July 2023.The isolates were characterized by whole genome sequencing to obtain multi-locus sequencing typing (MLST) and identify the -environment and resistome and virulence genes content. In silico MLST analysis showed that all isolates belonged to the high-risk ST308 international clone. All strains possessed 22 different genes, encoding resistance to various antimicrobial agents. Whole genome sequencing revealed that the was chromosomally located within the integrative and conjugative element ICE and that it was part of one cassette along with two other resistance genes, and . Two additional resistance cassettes were also found in the genome, which included the arrays of , , , and , , , , . Additionally, the strains possessed various virulence genes, e.g., , , , , , and . All of the isolates shared identical genomes, which showed 98% similarity with the ST308 genome (acc. no CP020703), previously reported from Singapore. To our knowledge, this is the first report of ST308 -positive isolation in Europe, which indicates the transmission dynamics of this high-risk clone.

摘要

本研究的目的是报告9株阳性分离株的检测及分子特征,所有分离株均属于流行的高风险国际克隆ST308,且均于2023年5月至7月从希腊中部一家三级护理医院的患者中分离得到。通过全基因组测序对分离株进行特征分析,以获得多位点测序分型(MLST),并确定其环境、耐药组和毒力基因含量。计算机MLST分析表明,所有分离株均属于高风险的ST308国际克隆。所有菌株拥有22个不同的基因,编码对各种抗菌药物的抗性。全基因组测序显示,该基因位于整合和接合元件ICE的染色体上,并且它与另外两个抗性基因和一起是一个基因盒的一部分。在基因组中还发现了另外两个抗性基因盒,其中包括、、、的阵列以及、、、、的阵列。此外,这些菌株拥有各种毒力基因,例如、、、、、和。所有分离株共享相同的基因组,与先前从新加坡报道的ST308基因组(登录号CP020703)显示出98%的相似性。据我们所知,这是欧洲首次报告ST308阳性分离株,这表明了这种高风险克隆的传播动态。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9003/10537375/5564ccc1cec1/microorganisms-11-02159-g001.jpg

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